Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3233
Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with DMSO 7.5% |
---|---|---|---|---|---|
remove | |||||
3,400,683 | - | flhA | DVU3232 | 0.56 | -0.8 |
3,400,693 | - | flhA | DVU3232 | 0.57 | -0.2 |
3,400,693 | - | flhA | DVU3232 | 0.57 | -0.8 |
3,400,775 | - | flhA | DVU3232 | 0.61 | -0.7 |
3,400,875 | - | flhA | DVU3232 | 0.65 | -1.7 |
3,400,885 | - | flhA | DVU3232 | 0.66 | -0.8 |
3,400,885 | - | flhA | DVU3232 | 0.66 | -0.9 |
3,400,885 | - | flhA | DVU3232 | 0.66 | -1.1 |
3,400,885 | - | flhA | DVU3232 | 0.66 | -0.8 |
3,400,895 | - | flhA | DVU3232 | 0.66 | -0.7 |
3,400,895 | - | flhA | DVU3232 | 0.66 | -1.0 |
3,400,907 | - | flhA | DVU3232 | 0.67 | -0.7 |
3,400,914 | - | flhA | DVU3232 | 0.67 | -0.1 |
3,400,923 | - | flhA | DVU3232 | 0.68 | -1.0 |
3,400,960 | - | flhA | DVU3232 | 0.69 | -0.8 |
3,401,000 | + | flhA | DVU3232 | 0.71 | -1.7 |
3,401,004 | - | flhA | DVU3232 | 0.71 | -0.5 |
3,401,018 | - | flhA | DVU3232 | 0.72 | -2.5 |
3,401,028 | - | flhA | DVU3232 | 0.73 | -1.2 |
3,401,074 | + | flhA | DVU3232 | 0.75 | -0.8 |
3,401,074 | - | flhA | DVU3232 | 0.75 | -1.0 |
3,401,169 | + | flhA | DVU3232 | 0.79 | -1.3 |
3,401,205 | + | flhA | DVU3232 | 0.81 | -0.8 |
3,401,218 | - | flhA | DVU3232 | 0.82 | -1.4 |
3,401,357 | + | flhA | DVU3232 | 0.88 | -2.0 |
3,401,397 | + | -1.5 | |||
3,401,418 | + | -0.7 | |||
3,401,565 | + | -1.6 | |||
3,401,679 | + | -0.3 | |||
3,401,679 | + | -0.1 | |||
3,401,679 | + | -0.4 | |||
3,401,679 | + | -0.2 | |||
3,401,679 | + | +0.0 | |||
3,401,679 | + | +1.2 | |||
3,401,679 | + | -0.6 | |||
3,401,679 | + | +0.4 | |||
3,401,679 | + | +0.0 | |||
3,401,687 | - | +2.0 | |||
3,401,687 | - | -0.8 | |||
3,401,687 | - | +0.3 | |||
3,401,687 | - | -3.1 | |||
3,401,687 | - | -1.3 | |||
3,401,687 | - | -0.1 | |||
3,401,687 | - | +0.0 | |||
3,401,709 | - | -0.2 | |||
3,401,760 | + | -0.7 | |||
3,401,820 | + | flhB | DVU3233 | 0.13 | -1.6 |
3,401,824 | + | flhB | DVU3233 | 0.13 | -1.2 |
3,401,824 | + | flhB | DVU3233 | 0.13 | -0.4 |
3,401,832 | + | flhB | DVU3233 | 0.14 | -0.6 |
3,401,854 | - | flhB | DVU3233 | 0.16 | -1.1 |
3,401,865 | - | flhB | DVU3233 | 0.17 | -0.4 |
3,401,865 | - | flhB | DVU3233 | 0.17 | -0.4 |
3,401,923 | - | flhB | DVU3233 | 0.22 | -0.4 |
3,401,950 | - | flhB | DVU3233 | 0.25 | -0.4 |
3,401,998 | + | flhB | DVU3233 | 0.29 | -0.7 |
3,401,999 | - | flhB | DVU3233 | 0.30 | -0.7 |
3,402,006 | - | flhB | DVU3233 | 0.30 | -1.7 |
3,402,026 | + | flhB | DVU3233 | 0.32 | -1.0 |
3,402,111 | + | flhB | DVU3233 | 0.40 | -1.1 |
3,402,124 | + | flhB | DVU3233 | 0.41 | -0.9 |
3,402,231 | + | flhB | DVU3233 | 0.51 | -1.7 |
3,402,311 | - | flhB | DVU3233 | 0.59 | -0.6 |
3,402,378 | - | flhB | DVU3233 | 0.65 | -2.5 |
3,402,424 | + | flhB | DVU3233 | 0.69 | -0.6 |
3,402,425 | + | flhB | DVU3233 | 0.69 | -1.3 |
3,402,425 | + | flhB | DVU3233 | 0.69 | +0.1 |
3,402,465 | - | flhB | DVU3233 | 0.73 | -1.8 |
3,402,505 | + | flhB | DVU3233 | 0.77 | -1.4 |
3,402,505 | + | flhB | DVU3233 | 0.77 | -1.4 |
3,402,513 | - | flhB | DVU3233 | 0.77 | -0.8 |
3,402,663 | - | -1.1 | |||
3,402,725 | + | -0.5 | |||
3,402,733 | - | -0.5 | |||
3,402,758 | + | +0.1 | |||
3,402,766 | - | +0.9 | |||
3,402,766 | - | +0.1 | |||
3,402,766 | - | +0.4 | |||
3,402,787 | + | -2.5 | |||
3,402,887 | + | -0.2 | |||
3,402,894 | + | -0.2 | |||
3,402,894 | + | +0.5 | |||
3,402,894 | + | -0.6 | |||
3,402,894 | + | -0.5 | |||
3,402,895 | - | -0.6 | |||
3,402,895 | - | +0.6 | |||
3,402,902 | - | -0.3 | |||
3,402,902 | - | +0.6 | |||
3,402,902 | - | +0.6 | |||
3,402,902 | - | -0.3 | |||
3,402,902 | - | +0.2 | |||
3,402,902 | - | -0.2 | |||
3,402,902 | - | -0.5 | |||
3,402,902 | - | +0.1 | |||
3,402,921 | - | -1.0 | |||
3,402,921 | - | -1.2 | |||
3,402,950 | + | +0.1 | |||
3,402,956 | - | +0.5 | |||
3,403,057 | + | DVU3234 | 0.22 | -0.8 | |
3,403,065 | - | DVU3234 | 0.23 | -0.4 | |
3,403,262 | - | DVU3234 | 0.48 | -1.4 | |
3,403,267 | - | DVU3234 | 0.49 | -0.6 | |
3,403,331 | + | DVU3234 | 0.57 | -0.9 | |
3,403,382 | + | DVU3234 | 0.63 | -0.9 | |
3,403,417 | + | DVU3234 | 0.68 | -0.6 | |
3,403,420 | - | DVU3234 | 0.68 | -0.3 | |
3,403,427 | + | DVU3234 | 0.69 | -0.5 | |
3,403,448 | - | DVU3234 | 0.72 | -0.1 | |
3,403,490 | + | DVU3234 | 0.77 | -1.0 | |
3,403,555 | - | DVU3234 | 0.85 | -0.6 | |
3,403,593 | - | -0.6 | |||
3,403,595 | + | -0.7 | |||
3,403,721 | + | +0.6 |
Or see this region's nucleotide sequence