Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2850

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2848 and stfE are separated by 9 nucleotidesstfE and DVU2850 overlap by 8 nucleotidesDVU2850 and DVU2851 are separated by 8 nucleotides DVU2848: DVU2848 - tail fiber assembly protein, putative (TIGR), at 2,949,782 to 2,950,321 DVU2848 DVU2849: stfE - tail fiber protein, putative (TIGR), at 2,950,331 to 2,951,146 stfE DVU2850: DVU2850 - tail protein, putative (TIGR), at 2,951,139 to 2,951,765 DVU2850 DVU2851: DVU2851 - tail protein, putative (TIGR), at 2,951,774 to 2,952,835 DVU2851 Position (kb) 2951 2952Strain fitness (log2 ratio) -2 -1 0 1at 2950.172 kb on + strand, within DVU2848at 2950.172 kb on + strand, within DVU2848at 2950.386 kb on + strandat 2950.414 kb on - strand, within stfEat 2950.414 kb on - strand, within stfEat 2950.512 kb on - strand, within stfEat 2950.522 kb on - strand, within stfEat 2950.522 kb on - strand, within stfEat 2950.640 kb on - strand, within stfEat 2950.701 kb on + strand, within stfEat 2950.702 kb on - strand, within stfEat 2950.724 kb on + strand, within stfEat 2950.729 kb on + strand, within stfEat 2950.759 kb on + strand, within stfEat 2951.019 kb on + strand, within stfEat 2951.034 kb on - strand, within stfEat 2951.040 kb on + strand, within stfEat 2951.416 kb on + strand, within DVU2850at 2951.443 kb on + strand, within DVU2850at 2951.472 kb on + strand, within DVU2850at 2951.652 kb on - strand, within DVU2850at 2951.779 kb on - strandat 2951.779 kb on - strandat 2951.846 kb on + strandat 2952.191 kb on - strand, within DVU2851at 2952.191 kb on - strand, within DVU2851at 2952.359 kb on + strand, within DVU2851at 2952.540 kb on + strand, within DVU2851at 2952.540 kb on + strand, within DVU2851at 2952.543 kb on - strand, within DVU2851at 2952.543 kb on - strand, within DVU2851at 2952.548 kb on - strand, within DVU2851at 2952.603 kb on + strand, within DVU2851

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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2,950,172 + DVU2848 0.72 +0.5
2,950,172 + DVU2848 0.72 +0.0
2,950,386 + +0.2
2,950,414 - stfE DVU2849 0.10 -0.0
2,950,414 - stfE DVU2849 0.10 +0.0
2,950,512 - stfE DVU2849 0.22 -2.1
2,950,522 - stfE DVU2849 0.23 -0.5
2,950,522 - stfE DVU2849 0.23 +0.2
2,950,640 - stfE DVU2849 0.38 -0.9
2,950,701 + stfE DVU2849 0.45 -1.0
2,950,702 - stfE DVU2849 0.45 +0.1
2,950,724 + stfE DVU2849 0.48 +0.0
2,950,729 + stfE DVU2849 0.49 -0.3
2,950,759 + stfE DVU2849 0.52 +0.4
2,951,019 + stfE DVU2849 0.84 -0.5
2,951,034 - stfE DVU2849 0.86 +0.4
2,951,040 + stfE DVU2849 0.87 +0.8
2,951,416 + DVU2850 0.44 -0.2
2,951,443 + DVU2850 0.48 -1.1
2,951,472 + DVU2850 0.53 -0.0
2,951,652 - DVU2850 0.82 -1.0
2,951,779 - -0.2
2,951,779 - -2.1
2,951,846 + -1.3
2,952,191 - DVU2851 0.39 +0.4
2,952,191 - DVU2851 0.39 -1.4
2,952,359 + DVU2851 0.55 -0.0
2,952,540 + DVU2851 0.72 +0.8
2,952,540 + DVU2851 0.72 -1.9
2,952,543 - DVU2851 0.72 -0.2
2,952,543 - DVU2851 0.72 -0.3
2,952,548 - DVU2851 0.73 +0.3
2,952,603 + DVU2851 0.78 +0.1

Or see this region's nucleotide sequence