Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2850
Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with DMSO 7.5% |
---|---|---|---|---|---|
remove | |||||
2,950,172 | + | DVU2848 | 0.72 | +0.5 | |
2,950,172 | + | DVU2848 | 0.72 | +0.0 | |
2,950,386 | + | +0.2 | |||
2,950,414 | - | stfE | DVU2849 | 0.10 | -0.0 |
2,950,414 | - | stfE | DVU2849 | 0.10 | +0.0 |
2,950,512 | - | stfE | DVU2849 | 0.22 | -2.1 |
2,950,522 | - | stfE | DVU2849 | 0.23 | -0.5 |
2,950,522 | - | stfE | DVU2849 | 0.23 | +0.2 |
2,950,640 | - | stfE | DVU2849 | 0.38 | -0.9 |
2,950,701 | + | stfE | DVU2849 | 0.45 | -1.0 |
2,950,702 | - | stfE | DVU2849 | 0.45 | +0.1 |
2,950,724 | + | stfE | DVU2849 | 0.48 | +0.0 |
2,950,729 | + | stfE | DVU2849 | 0.49 | -0.3 |
2,950,759 | + | stfE | DVU2849 | 0.52 | +0.4 |
2,951,019 | + | stfE | DVU2849 | 0.84 | -0.5 |
2,951,034 | - | stfE | DVU2849 | 0.86 | +0.4 |
2,951,040 | + | stfE | DVU2849 | 0.87 | +0.8 |
2,951,416 | + | DVU2850 | 0.44 | -0.2 | |
2,951,443 | + | DVU2850 | 0.48 | -1.1 | |
2,951,472 | + | DVU2850 | 0.53 | -0.0 | |
2,951,652 | - | DVU2850 | 0.82 | -1.0 | |
2,951,779 | - | -0.2 | |||
2,951,779 | - | -2.1 | |||
2,951,846 | + | -1.3 | |||
2,952,191 | - | DVU2851 | 0.39 | +0.4 | |
2,952,191 | - | DVU2851 | 0.39 | -1.4 | |
2,952,359 | + | DVU2851 | 0.55 | -0.0 | |
2,952,540 | + | DVU2851 | 0.72 | +0.8 | |
2,952,540 | + | DVU2851 | 0.72 | -1.9 | |
2,952,543 | - | DVU2851 | 0.72 | -0.2 | |
2,952,543 | - | DVU2851 | 0.72 | -0.3 | |
2,952,548 | - | DVU2851 | 0.73 | +0.3 | |
2,952,603 | + | DVU2851 | 0.78 | +0.1 |
Or see this region's nucleotide sequence