Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2220 and DVU2221 are separated by 45 nucleotides DVU2221 and ssb are separated by 4 nucleotides ssb and DVU2223 are separated by 39 nucleotides DVU2223 and DVU2224 are separated by 2 nucleotides DVU2224 and DVU2225 are separated by 18 nucleotides
DVU2220: DVU2220 - conserved hypothetical protein (TIGR), at 2,314,522 to 2,314,791
DVU2220
DVU2221: DVU2221 - hypothetical protein (TIGR), at 2,314,837 to 2,314,977
DVU2221
DVU2222: ssb - single-strand binding protein (TIGR), at 2,314,982 to 2,315,512
ssb
DVU2223: DVU2223 - hypothetical protein (TIGR), at 2,315,552 to 2,315,896
DVU2223
DVU2224: DVU2224 - hypothetical protein (TIGR), at 2,315,899 to 2,316,549
DVU2224
DVU2225: DVU2225 - acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit (TIGR), at 2,316,568 to 2,318,823
DVU2225
Position (kb)
2315
2316 Strain fitness (log2 ratio)
-2
-1
0
1 at 2314.650 kb on - strand, within DVU2220 at 2314.906 kb on - strand, within DVU2221 at 2314.980 kb on + strand at 2315.638 kb on + strand, within DVU2223 at 2315.720 kb on - strand, within DVU2223 at 2315.824 kb on - strand, within DVU2223 at 2315.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 2,314,650 - DVU2220 0.47 -0.4 2,314,906 - DVU2221 0.49 +0.3 2,314,980 + -0.7 2,315,638 + DVU2223 0.25 -0.3 2,315,720 - DVU2223 0.49 -1.1 2,315,824 - DVU2223 0.79 -1.8 2,315,879 - +0.1
Or see this region's nucleotide sequence