Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pfkA and DVU2062 are separated by 14 nucleotides DVU2062 and DVU2063 overlap by 4 nucleotides
DVU2061: pfkA - 6-phosphofructokinase (TIGR), at 2,136,887 to 2,138,221
pfkA
DVU2062: DVU2062 - ATP-dependent DNA helicase, UvrD/REP family (TIGR), at 2,138,236 to 2,141,694
DVU2062
DVU2063: DVU2063 - conserved hypothetical protein (TIGR), at 2,141,691 to 2,144,645
DVU2063
Position (kb)
2138
2139
2140
2141
2142 Strain fitness (log2 ratio)
-2
-1
0
1 at 2137.236 kb on + strand, within pfkA at 2137.238 kb on + strand, within pfkA at 2137.361 kb on - strand, within pfkA at 2137.426 kb on + strand, within pfkA at 2137.426 kb on + strand, within pfkA at 2137.444 kb on - strand, within pfkA at 2137.503 kb on - strand, within pfkA at 2137.566 kb on - strand, within pfkA at 2137.647 kb on + strand, within pfkA at 2137.757 kb on + strand, within pfkA at 2137.814 kb on + strand, within pfkA at 2137.837 kb on + strand, within pfkA at 2137.863 kb on - strand, within pfkA at 2137.868 kb on - strand, within pfkA at 2137.875 kb on + strand, within pfkA at 2137.930 kb on + strand, within pfkA at 2137.940 kb on + strand, within pfkA at 2137.948 kb on - strand, within pfkA at 2137.987 kb on + strand, within pfkA at 2138.007 kb on - strand, within pfkA at 2139.600 kb on + strand, within DVU2062 at 2140.125 kb on - strand, within DVU2062 at 2140.711 kb on - strand, within DVU2062 at 2140.817 kb on + strand, within DVU2062 at 2140.827 kb on + strand, within DVU2062 at 2140.943 kb on - strand, within DVU2062 at 2141.055 kb on + strand, within DVU2062 at 2141.376 kb on + strand at 2141.408 kb on + strand at 2141.408 kb on + strand at 2141.431 kb on + strand at 2141.436 kb on + strand at 2141.439 kb on - strand at 2141.536 kb on + strand at 2141.566 kb on + strand at 2141.603 kb on - strand at 2141.625 kb on + strand at 2141.625 kb on - strand at 2141.888 kb on + strand at 2142.003 kb on - strand, within DVU2063 at 2142.495 kb on - strand, within DVU2063 at 2142.671 kb on + strand, within DVU2063
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 2,137,236 + pfkA DVU2061 0.26 -0.3 2,137,238 + pfkA DVU2061 0.26 +0.7 2,137,361 - pfkA DVU2061 0.36 -0.5 2,137,426 + pfkA DVU2061 0.40 -1.2 2,137,426 + pfkA DVU2061 0.40 +0.5 2,137,444 - pfkA DVU2061 0.42 +0.4 2,137,503 - pfkA DVU2061 0.46 -0.4 2,137,566 - pfkA DVU2061 0.51 +0.5 2,137,647 + pfkA DVU2061 0.57 +0.0 2,137,757 + pfkA DVU2061 0.65 -0.5 2,137,814 + pfkA DVU2061 0.69 +0.6 2,137,837 + pfkA DVU2061 0.71 +0.8 2,137,863 - pfkA DVU2061 0.73 -0.2 2,137,868 - pfkA DVU2061 0.73 +1.6 2,137,875 + pfkA DVU2061 0.74 +0.4 2,137,930 + pfkA DVU2061 0.78 -0.7 2,137,940 + pfkA DVU2061 0.79 -0.9 2,137,948 - pfkA DVU2061 0.79 +0.9 2,137,987 + pfkA DVU2061 0.82 +0.8 2,138,007 - pfkA DVU2061 0.84 +0.4 2,139,600 + DVU2062 0.39 -1.1 2,140,125 - DVU2062 0.55 -0.5 2,140,711 - DVU2062 0.72 -1.2 2,140,817 + DVU2062 0.75 -0.8 2,140,827 + DVU2062 0.75 -0.8 2,140,943 - DVU2062 0.78 -1.8 2,141,055 + DVU2062 0.81 -0.4 2,141,376 + +0.8 2,141,408 + -1.0 2,141,408 + -0.6 2,141,431 + +0.9 2,141,436 + +1.2 2,141,439 - -2.0 2,141,536 + +1.2 2,141,566 + -0.0 2,141,603 - -1.3 2,141,625 + -0.2 2,141,625 - -0.2 2,141,888 + -1.1 2,142,003 - DVU2063 0.11 +0.0 2,142,495 - DVU2063 0.27 -2.1 2,142,671 + DVU2063 0.33 -0.2
Or see this region's nucleotide sequence