Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF15009 and DVU2016 overlap by 115 nucleotides DVU2016 and DVU2017 are separated by 43 nucleotides DVU2017 and DORF15023 are separated by 40 nucleotides DORF15023 and DVU2019 overlap by 11 nucleotides
DORF15009: DORF15009 - SEED: Response regulator containing a CheY-like receiver domain and a GGDEF domain, at 2,093,576 to 2,093,878
DORF15009
DVU2016: DVU2016 - GGDEF domain protein (TIGR), at 2,093,764 to 2,094,645
DVU2016
DVU2017: DVU2017 - ISDvu5, transposase (TIGR), at 2,094,689 to 2,095,930
DVU2017
DORF15023: DORF15023 - no description, at 2,095,971 to 2,096,186
DORF15023
DVU2019: DVU2019 - conserved hypothetical protein (TIGR), at 2,096,176 to 2,098,245
DVU2019
Position (kb)
2094
2095
2096 Strain fitness (log2 ratio)
-2
-1
0
1 at 2094.049 kb on + strand, within DVU2016 at 2094.391 kb on + strand, within DVU2016 at 2094.391 kb on + strand, within DVU2016 at 2094.666 kb on - strand at 2094.701 kb on + strand at 2094.765 kb on + strand at 2094.766 kb on - strand at 2094.773 kb on - strand at 2094.885 kb on + strand, within DVU2017 at 2094.897 kb on + strand, within DVU2017 at 2094.998 kb on + strand, within DVU2017 at 2095.103 kb on + strand, within DVU2017 at 2095.103 kb on + strand, within DVU2017 at 2095.125 kb on + strand, within DVU2017 at 2095.125 kb on + strand, within DVU2017 at 2095.133 kb on - strand, within DVU2017 at 2095.272 kb on + strand, within DVU2017 at 2095.322 kb on - strand, within DVU2017 at 2095.409 kb on + strand, within DVU2017 at 2095.482 kb on + strand, within DVU2017 at 2095.494 kb on + strand, within DVU2017 at 2095.496 kb on - strand, within DVU2017 at 2095.599 kb on - strand, within DVU2017 at 2095.705 kb on - strand, within DVU2017 at 2095.802 kb on - strand, within DVU2017 at 2095.908 kb on - strand at 2096.117 kb on + strand, within DORF15023 at 2096.126 kb on - strand, within DORF15023 at 2096.263 kb on + strand at 2096.271 kb on - strand at 2096.271 kb on - strand at 2096.397 kb on + strand, within DVU2019 at 2096.448 kb on + strand, within DVU2019 at 2096.555 kb on + strand, within DVU2019 at 2096.610 kb on + strand, within DVU2019 at 2096.618 kb on - strand, within DVU2019 at 2096.618 kb on - strand, within DVU2019 at 2096.643 kb on - strand, within DVU2019 at 2096.819 kb on + strand, within DVU2019 at 2096.833 kb on - strand, within DVU2019 at 2096.869 kb on + strand, within DVU2019
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 2,094,049 + DVU2016 0.32 -0.2 2,094,391 + DVU2016 0.71 -0.7 2,094,391 + DVU2016 0.71 -0.8 2,094,666 - +0.7 2,094,701 + -0.9 2,094,765 + -0.4 2,094,766 - +0.0 2,094,773 - -0.5 2,094,885 + DVU2017 0.16 -1.8 2,094,897 + DVU2017 0.17 -0.2 2,094,998 + DVU2017 0.25 -0.1 2,095,103 + DVU2017 0.33 -0.4 2,095,103 + DVU2017 0.33 -0.1 2,095,125 + DVU2017 0.35 -0.6 2,095,125 + DVU2017 0.35 +0.0 2,095,133 - DVU2017 0.36 -0.8 2,095,272 + DVU2017 0.47 -0.2 2,095,322 - DVU2017 0.51 +0.5 2,095,409 + DVU2017 0.58 -0.7 2,095,482 + DVU2017 0.64 +0.4 2,095,494 + DVU2017 0.65 -0.4 2,095,496 - DVU2017 0.65 -0.8 2,095,599 - DVU2017 0.73 -0.4 2,095,705 - DVU2017 0.82 +0.1 2,095,802 - DVU2017 0.90 +0.3 2,095,908 - +0.1 2,096,117 + DORF15023 0.68 +0.4 2,096,126 - DORF15023 0.72 +0.4 2,096,263 + -0.2 2,096,271 - -0.9 2,096,271 - -0.7 2,096,397 + DVU2019 0.11 -0.4 2,096,448 + DVU2019 0.13 -1.5 2,096,555 + DVU2019 0.18 -2.0 2,096,610 + DVU2019 0.21 -0.5 2,096,618 - DVU2019 0.21 -1.9 2,096,618 - DVU2019 0.21 -0.2 2,096,643 - DVU2019 0.23 -0.4 2,096,819 + DVU2019 0.31 -0.6 2,096,833 - DVU2019 0.32 +0.3 2,096,869 + DVU2019 0.33 -1.0
Or see this region's nucleotide sequence