Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2016
Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with DMSO 7.5% |
---|---|---|---|---|---|
remove | |||||
2,092,812 | - | fprA-1 | DVU2014 | 0.35 | +0.4 |
2,092,862 | - | fprA-1 | DVU2014 | 0.39 | -0.2 |
2,092,911 | + | fprA-1 | DVU2014 | 0.43 | +0.3 |
2,093,082 | + | fprA-1 | DVU2014 | 0.58 | -0.0 |
2,093,167 | - | fprA-1 | DVU2014 | 0.65 | -0.5 |
2,093,256 | + | fprA-1 | DVU2014 | 0.72 | -0.2 |
2,093,272 | - | fprA-1 | DVU2014 | 0.74 | +0.7 |
2,093,286 | + | fprA-1 | DVU2014 | 0.75 | -0.7 |
2,093,313 | - | fprA-1 | DVU2014 | 0.77 | -1.3 |
2,093,399 | - | fprA-1 | DVU2014 | 0.85 | -0.3 |
2,093,424 | - | fprA-1 | DVU2014 | 0.87 | -0.3 |
2,093,504 | + | -0.0 | |||
2,094,049 | + | DVU2016 | 0.32 | -0.2 | |
2,094,391 | + | DVU2016 | 0.71 | -0.7 | |
2,094,391 | + | DVU2016 | 0.71 | -0.8 | |
2,094,666 | - | +0.7 | |||
2,094,701 | + | -0.9 | |||
2,094,765 | + | -0.4 | |||
2,094,766 | - | +0.0 | |||
2,094,773 | - | -0.5 | |||
2,094,885 | + | DVU2017 | 0.16 | -1.8 | |
2,094,897 | + | DVU2017 | 0.17 | -0.2 | |
2,094,998 | + | DVU2017 | 0.25 | -0.1 | |
2,095,103 | + | DVU2017 | 0.33 | -0.4 | |
2,095,103 | + | DVU2017 | 0.33 | -0.1 | |
2,095,125 | + | DVU2017 | 0.35 | -0.6 | |
2,095,125 | + | DVU2017 | 0.35 | +0.0 | |
2,095,133 | - | DVU2017 | 0.36 | -0.8 | |
2,095,272 | + | DVU2017 | 0.47 | -0.2 | |
2,095,322 | - | DVU2017 | 0.51 | +0.5 | |
2,095,409 | + | DVU2017 | 0.58 | -0.7 | |
2,095,482 | + | DVU2017 | 0.64 | +0.4 | |
2,095,494 | + | DVU2017 | 0.65 | -0.4 | |
2,095,496 | - | DVU2017 | 0.65 | -0.8 | |
2,095,599 | - | DVU2017 | 0.73 | -0.4 |
Or see this region's nucleotide sequence