Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt vacJhomolog and DVU1243 are separated by 8 nucleotides DVU1243 and DVU1244 are separated by 3 nucleotides DVU1244 and DVU1245 are separated by 108 nucleotides DVU1245 and DVU1246 are separated by 11 nucleotides
DVU1242: vacJhomolog - vacJ lipoprotein, putative (TIGR), at 1,329,456 to 1,330,277
vacJhomolog
DVU1243: DVU1243 - conserved hypothetical protein (TIGR), at 1,330,286 to 1,330,918
DVU1243
DVU1244: DVU1244 - conserved hypothetical protein (TIGR), at 1,330,922 to 1,331,368
DVU1244
DVU1245: DVU1245 - ABC transporter, ATP-binding protein (TIGR), at 1,331,477 to 1,332,301
DVU1245
DVU1246: DVU1246 - membrane protein, putative (TIGR), at 1,332,313 to 1,333,116
DVU1246
Position (kb)
1330
1331
1332 Strain fitness (log2 ratio)
-2
-1
0
1 at 1330.202 kb on - strand at 1330.224 kb on + strand at 1330.231 kb on + strand at 1330.350 kb on + strand, within DVU1243 at 1330.353 kb on - strand, within DVU1243 at 1330.479 kb on + strand, within DVU1243 at 1330.489 kb on + strand, within DVU1243 at 1330.505 kb on + strand, within DVU1243 at 1330.505 kb on + strand, within DVU1243 at 1330.527 kb on + strand, within DVU1243 at 1330.761 kb on + strand, within DVU1243 at 1330.871 kb on + strand at 1330.890 kb on - strand at 1330.937 kb on - strand at 1331.092 kb on - strand, within DVU1244 at 1331.114 kb on - strand, within DVU1244 at 1331.250 kb on + strand, within DVU1244 at 1331.280 kb on - strand, within DVU1244 at 1331.320 kb on - strand, within DVU1244 at 1331.380 kb on + strand at 1331.464 kb on - strand at 1331.609 kb on + strand, within DVU1245 at 1331.676 kb on - strand, within DVU1245 at 1331.776 kb on + strand, within DVU1245 at 1331.908 kb on + strand, within DVU1245 at 1331.916 kb on - strand, within DVU1245 at 1331.916 kb on - strand, within DVU1245 at 1332.151 kb on - strand, within DVU1245 at 1332.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 1,330,202 - -0.7 1,330,224 + -1.2 1,330,231 + -1.1 1,330,350 + DVU1243 0.10 -1.3 1,330,353 - DVU1243 0.11 -0.6 1,330,479 + DVU1243 0.30 +0.8 1,330,489 + DVU1243 0.32 -0.7 1,330,505 + DVU1243 0.35 +0.5 1,330,505 + DVU1243 0.35 -0.7 1,330,527 + DVU1243 0.38 -0.0 1,330,761 + DVU1243 0.75 -0.3 1,330,871 + +0.5 1,330,890 - -0.2 1,330,937 - -1.6 1,331,092 - DVU1244 0.38 -0.7 1,331,114 - DVU1244 0.43 -2.0 1,331,250 + DVU1244 0.73 +0.3 1,331,280 - DVU1244 0.80 +0.1 1,331,320 - DVU1244 0.89 -0.2 1,331,380 + -0.5 1,331,464 - +0.3 1,331,609 + DVU1245 0.16 -1.3 1,331,676 - DVU1245 0.24 -0.9 1,331,776 + DVU1245 0.36 -0.4 1,331,908 + DVU1245 0.52 +0.8 1,331,916 - DVU1245 0.53 -2.5 1,331,916 - DVU1245 0.53 -2.0 1,332,151 - DVU1245 0.82 -0.3 1,332,278 - -0.1
Or see this region's nucleotide sequence