Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsF and rpsR are separated by 0 nucleotides rpsR and rplI are separated by 12 nucleotides rplI and dnaB overlap by 50 nucleotides dnaB and DVU0961 are separated by 401 nucleotides
DVU0956: rpsF - ribosomal protein S6 (TIGR), at 1,051,480 to 1,051,785
rpsF
DVU0957: rpsR - ribosomal protein S18 (TIGR), at 1,051,786 to 1,052,049
rpsR
DVU0958: rplI - ribosomal protein L9 (TIGR), at 1,052,062 to 1,052,565
rplI
DVU0959: dnaB - replicative DNA helicase (TIGR), at 1,052,516 to 1,053,997
dnaB
DVU0961: DVU0961 - conserved hypothetical protein (TIGR), at 1,054,399 to 1,058,463
DVU0961
Position (kb)
1052
1053
1054 Strain fitness (log2 ratio)
-1
0
1 at 1054.089 kb on + strand at 1054.089 kb on + strand at 1054.121 kb on - strand at 1054.191 kb on - strand at 1054.287 kb on + strand at 1054.295 kb on + strand at 1054.311 kb on + strand at 1054.311 kb on + strand at 1054.321 kb on - strand at 1054.323 kb on + strand at 1054.323 kb on + strand at 1054.364 kb on + strand at 1054.459 kb on - strand at 1054.505 kb on + strand at 1054.609 kb on + strand at 1054.617 kb on - strand at 1054.785 kb on + strand at 1054.856 kb on + strand, within DVU0961 at 1054.865 kb on - strand, within DVU0961 at 1054.989 kb on - strand, within DVU0961
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 1,054,089 + -0.9 1,054,089 + -0.1 1,054,121 - -0.7 1,054,191 - -0.5 1,054,287 + -0.5 1,054,295 + +0.3 1,054,311 + -1.1 1,054,311 + -1.7 1,054,321 - +0.2 1,054,323 + -0.9 1,054,323 + -1.1 1,054,364 + +0.8 1,054,459 - +0.5 1,054,505 + -0.1 1,054,609 + +0.2 1,054,617 - -0.1 1,054,785 + -0.2 1,054,856 + DVU0961 0.11 -0.5 1,054,865 - DVU0961 0.11 -0.5 1,054,989 - DVU0961 0.15 +0.2
Or see this region's nucleotide sequence