Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0883

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfusA and DVU0882 are separated by 205 nucleotidesDVU0882 and nrdH are separated by 273 nucleotidesnrdH and ftrB overlap by 4 nucleotidesftrB and DVU0885 are separated by 441 nucleotides DVU0881: fusA - translation elongation factor G, putative (TIGR), at 971,471 to 973,537 fusA DVU0882: DVU0882 - hypothetical protein (TIGR), at 973,743 to 974,207 DVU0882 DVU0883: nrdH - glutaredoxin, putative (TIGR), at 974,481 to 974,738 nrdH DVU0884: ftrB - conserved hypothetical protein (TIGR), at 974,735 to 975,079 ftrB DVU0885: DVU0885 - amidohydrolase family protein (TIGR), at 975,521 to 976,309 DVU0885 Position (kb) 974 975Strain fitness (log2 ratio) -2 -1 0 1 2at 973.520 kb on + strandat 973.560 kb on - strandat 973.707 kb on - strandat 973.722 kb on + strandat 973.854 kb on + strand, within DVU0882at 973.892 kb on - strand, within DVU0882at 973.936 kb on - strand, within DVU0882at 973.999 kb on + strand, within DVU0882at 974.000 kb on + strand, within DVU0882at 974.062 kb on - strand, within DVU0882at 974.086 kb on + strand, within DVU0882at 974.091 kb on + strand, within DVU0882at 974.107 kb on + strand, within DVU0882at 974.115 kb on - strand, within DVU0882at 974.117 kb on + strand, within DVU0882at 974.146 kb on - strand, within DVU0882at 974.204 kb on - strandat 974.235 kb on - strandat 974.267 kb on + strandat 974.321 kb on - strandat 974.368 kb on + strandat 974.375 kb on + strandat 974.404 kb on - strandat 974.407 kb on + strandat 974.407 kb on + strandat 974.513 kb on + strand, within nrdHat 974.519 kb on - strand, within nrdHat 974.521 kb on - strand, within nrdHat 974.538 kb on - strand, within nrdHat 974.647 kb on - strand, within nrdHat 974.647 kb on - strand, within nrdHat 974.709 kb on + strand, within nrdHat 974.772 kb on - strand, within ftrBat 974.814 kb on - strand, within ftrBat 974.822 kb on + strand, within ftrBat 974.884 kb on - strand, within ftrBat 974.920 kb on + strand, within ftrBat 974.928 kb on - strand, within ftrBat 974.929 kb on - strand, within ftrBat 975.027 kb on - strand, within ftrBat 975.027 kb on - strand, within ftrBat 975.250 kb on + strandat 975.399 kb on + strandat 975.399 kb on - strandat 975.412 kb on + strandat 975.420 kb on - strandat 975.593 kb on + strandat 975.685 kb on + strand, within DVU0885at 975.691 kb on + strand, within DVU0885at 975.692 kb on - strand, within DVU0885

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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973,520 + -0.5
973,560 - -0.9
973,707 - +1.1
973,722 + +0.9
973,854 + DVU0882 0.24 -1.3
973,892 - DVU0882 0.32 -0.7
973,936 - DVU0882 0.42 -2.5
973,999 + DVU0882 0.55 +0.3
974,000 + DVU0882 0.55 +0.2
974,062 - DVU0882 0.69 -1.0
974,086 + DVU0882 0.74 -0.5
974,091 + DVU0882 0.75 +0.0
974,107 + DVU0882 0.78 +0.4
974,115 - DVU0882 0.80 +0.1
974,117 + DVU0882 0.80 -0.0
974,146 - DVU0882 0.87 +2.3
974,204 - -1.3
974,235 - +0.8
974,267 + +0.1
974,321 - -1.3
974,368 + +1.1
974,375 + -0.4
974,404 - -0.0
974,407 + +0.7
974,407 + -1.2
974,513 + nrdH DVU0883 0.12 -0.4
974,519 - nrdH DVU0883 0.15 -1.1
974,521 - nrdH DVU0883 0.16 -0.2
974,538 - nrdH DVU0883 0.22 -1.1
974,647 - nrdH DVU0883 0.64 -0.2
974,647 - nrdH DVU0883 0.64 -0.7
974,709 + nrdH DVU0883 0.88 -1.5
974,772 - ftrB DVU0884 0.11 -1.2
974,814 - ftrB DVU0884 0.23 +0.1
974,822 + ftrB DVU0884 0.25 +0.3
974,884 - ftrB DVU0884 0.43 -0.1
974,920 + ftrB DVU0884 0.54 -0.3
974,928 - ftrB DVU0884 0.56 +0.7
974,929 - ftrB DVU0884 0.56 -0.5
975,027 - ftrB DVU0884 0.85 -1.4
975,027 - ftrB DVU0884 0.85 +0.8
975,250 + -0.4
975,399 + -0.7
975,399 - -0.1
975,412 + -0.4
975,420 - +0.3
975,593 + -1.4
975,685 + DVU0885 0.21 +0.2
975,691 + DVU0885 0.22 -0.6
975,692 - DVU0885 0.22 +1.0

Or see this region's nucleotide sequence