Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0040

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0039 and DVUA0040 are separated by 10 nucleotidesDVUA0040 and exeA are separated by 11 nucleotides DVUA0039: DVUA0039 - chain length determinant family protein (TIGR), at 46,451 to 47,953 DVUA0039 DVUA0040: DVUA0040 - polysaccharide biosynthesis protein, putative (TIGR), at 47,964 to 49,082 DVUA0040 DVUA0041: exeA - conserved domain protein (TIGR), at 49,094 to 50,413 exeA Position (kb) 47 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1at 47.034 kb on - strand, within DVUA0039at 47.134 kb on - strand, within DVUA0039at 47.251 kb on + strand, within DVUA0039at 47.391 kb on + strand, within DVUA0039at 47.456 kb on + strand, within DVUA0039at 47.456 kb on + strand, within DVUA0039at 47.635 kb on - strand, within DVUA0039at 47.687 kb on + strand, within DVUA0039at 47.699 kb on - strand, within DVUA0039at 47.732 kb on + strand, within DVUA0039at 47.741 kb on - strand, within DVUA0039at 47.772 kb on - strand, within DVUA0039at 47.857 kb on + strandat 47.900 kb on - strandat 47.912 kb on + strandat 48.047 kb on + strandat 48.047 kb on + strandat 48.047 kb on + strandat 48.055 kb on - strandat 48.100 kb on + strand, within DVUA0040at 48.100 kb on + strand, within DVUA0040at 48.100 kb on + strand, within DVUA0040at 48.100 kb on + strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.108 kb on - strand, within DVUA0040at 48.158 kb on - strand, within DVUA0040at 48.320 kb on + strand, within DVUA0040at 48.320 kb on + strand, within DVUA0040at 48.328 kb on - strand, within DVUA0040at 48.356 kb on + strand, within DVUA0040at 48.382 kb on - strand, within DVUA0040at 48.392 kb on - strand, within DVUA0040at 48.433 kb on - strand, within DVUA0040at 48.468 kb on + strand, within DVUA0040at 48.585 kb on - strand, within DVUA0040at 48.642 kb on - strand, within DVUA0040at 48.696 kb on - strand, within DVUA0040at 48.729 kb on + strand, within DVUA0040at 48.792 kb on - strand, within DVUA0040at 48.794 kb on + strand, within DVUA0040at 48.944 kb on - strand, within DVUA0040at 48.960 kb on - strand, within DVUA0040at 48.979 kb on - strandat 49.063 kb on + strandat 49.104 kb on - strandat 49.121 kb on - strandat 49.121 kb on - strandat 49.198 kb on + strandat 49.216 kb on - strandat 49.229 kb on + strand, within exeAat 49.232 kb on - strand, within exeAat 49.280 kb on - strand, within exeAat 49.290 kb on - strand, within exeAat 49.311 kb on + strand, within exeAat 49.428 kb on - strand, within exeAat 49.464 kb on - strand, within exeAat 49.481 kb on - strand, within exeAat 49.481 kb on - strand, within exeAat 49.484 kb on + strand, within exeAat 49.505 kb on - strand, within exeAat 49.505 kb on - strand, within exeAat 49.528 kb on + strand, within exeAat 49.591 kb on + strand, within exeAat 49.638 kb on + strand, within exeAat 49.656 kb on - strand, within exeAat 49.668 kb on + strand, within exeAat 49.668 kb on + strand, within exeAat 49.676 kb on - strand, within exeAat 49.727 kb on + strand, within exeAat 49.732 kb on + strand, within exeAat 49.735 kb on - strand, within exeAat 49.735 kb on - strand, within exeAat 49.737 kb on + strand, within exeAat 49.737 kb on + strand, within exeAat 49.765 kb on - strand, within exeAat 49.767 kb on + strand, within exeAat 49.790 kb on - strand, within exeAat 49.851 kb on - strand, within exeAat 49.874 kb on + strand, within exeAat 49.874 kb on - strand, within exeAat 49.903 kb on + strand, within exeAat 50.072 kb on + strand, within exeA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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47,034 - DVUA0039 0.39 -1.1
47,134 - DVUA0039 0.45 -0.7
47,251 + DVUA0039 0.53 -0.3
47,391 + DVUA0039 0.63 +0.2
47,456 + DVUA0039 0.67 -0.7
47,456 + DVUA0039 0.67 +0.3
47,635 - DVUA0039 0.79 +0.1
47,687 + DVUA0039 0.82 +0.3
47,699 - DVUA0039 0.83 +1.3
47,732 + DVUA0039 0.85 +0.7
47,741 - DVUA0039 0.86 +0.5
47,772 - DVUA0039 0.88 -0.4
47,857 + -0.4
47,900 - -1.4
47,912 + -0.2
48,047 + +0.6
48,047 + +0.3
48,047 + +0.0
48,055 - +0.2
48,100 + DVUA0040 0.12 -1.3
48,100 + DVUA0040 0.12 -0.5
48,100 + DVUA0040 0.12 -0.4
48,100 + DVUA0040 0.12 -0.7
48,108 - DVUA0040 0.13 -0.7
48,108 - DVUA0040 0.13 -3.3
48,108 - DVUA0040 0.13 -0.3
48,108 - DVUA0040 0.13 -0.8
48,108 - DVUA0040 0.13 -2.1
48,108 - DVUA0040 0.13 -0.2
48,158 - DVUA0040 0.17 +1.4
48,320 + DVUA0040 0.32 +0.5
48,320 + DVUA0040 0.32 -0.2
48,328 - DVUA0040 0.33 -0.4
48,356 + DVUA0040 0.35 +0.0
48,382 - DVUA0040 0.37 -0.9
48,392 - DVUA0040 0.38 +0.6
48,433 - DVUA0040 0.42 -0.0
48,468 + DVUA0040 0.45 -2.7
48,585 - DVUA0040 0.55 +0.3
48,642 - DVUA0040 0.61 +0.3
48,696 - DVUA0040 0.65 +0.0
48,729 + DVUA0040 0.68 -1.5
48,792 - DVUA0040 0.74 -0.4
48,794 + DVUA0040 0.74 +1.6
48,944 - DVUA0040 0.88 -0.2
48,960 - DVUA0040 0.89 -2.9
48,979 - +0.6
49,063 + +0.2
49,104 - -2.7
49,121 - +0.3
49,121 - -1.2
49,198 + -0.3
49,216 - -0.9
49,229 + exeA DVUA0041 0.10 -0.8
49,232 - exeA DVUA0041 0.10 -0.7
49,280 - exeA DVUA0041 0.14 -0.3
49,290 - exeA DVUA0041 0.15 -0.1
49,311 + exeA DVUA0041 0.16 -0.5
49,428 - exeA DVUA0041 0.25 -0.0
49,464 - exeA DVUA0041 0.28 -0.1
49,481 - exeA DVUA0041 0.29 -0.1
49,481 - exeA DVUA0041 0.29 -0.2
49,484 + exeA DVUA0041 0.30 +0.3
49,505 - exeA DVUA0041 0.31 -0.1
49,505 - exeA DVUA0041 0.31 -0.0
49,528 + exeA DVUA0041 0.33 -0.6
49,591 + exeA DVUA0041 0.38 -0.4
49,638 + exeA DVUA0041 0.41 -0.1
49,656 - exeA DVUA0041 0.43 -0.1
49,668 + exeA DVUA0041 0.43 +0.4
49,668 + exeA DVUA0041 0.43 +0.2
49,676 - exeA DVUA0041 0.44 -0.4
49,727 + exeA DVUA0041 0.48 +0.1
49,732 + exeA DVUA0041 0.48 -0.2
49,735 - exeA DVUA0041 0.49 +0.3
49,735 - exeA DVUA0041 0.49 +0.3
49,737 + exeA DVUA0041 0.49 -0.3
49,737 + exeA DVUA0041 0.49 -0.6
49,765 - exeA DVUA0041 0.51 -0.3
49,767 + exeA DVUA0041 0.51 +0.0
49,790 - exeA DVUA0041 0.53 +0.8
49,851 - exeA DVUA0041 0.57 +0.3
49,874 + exeA DVUA0041 0.59 -0.5
49,874 - exeA DVUA0041 0.59 -0.8
49,903 + exeA DVUA0041 0.61 +0.8
50,072 + exeA DVUA0041 0.74 -0.1

Or see this region's nucleotide sequence