Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF2077 and DVUA0108 overlap by 76 nucleotides DVUA0108 and DVUA0109 are separated by 8 nucleotides DVUA0109 and DVUA0110 overlap by 4 nucleotides
DORF2077: DORF2077 - SEED: FIG00603320: hypothetical protein, at 145,353 to 145,655
DORF2077
DVUA0108: DVUA0108 - hypothetical protein (TIGR), at 145,580 to 146,200
DVUA0108
DVUA0109: DVUA0109 - type III secretion system chaperone, LcrH/SycD family (TIGR), at 146,209 to 146,709
DVUA0109
DVUA0110: DVUA0110 - type III secretion system target, YopB family (TIGR), at 146,706 to 147,713
DVUA0110
DVUA0111: DVUA0111 - type III secretion system protein, IpaC family, putative (TIGR), at 147,662 to 148,558
DVUA0111
Position (kb) 146
147 Strain fitness (log2 ratio) -1
0
1 at 145.214 kb on - strand at 145.335 kb on - strand at 145.335 kb on - strand at 145.343 kb on - strand at 145.400 kb on - strand, within DORF2077 at 145.448 kb on + strand, within DORF2077 at 145.448 kb on + strand, within DORF2077 at 145.466 kb on + strand, within DORF2077 at 145.495 kb on - strand, within DORF2077 at 145.517 kb on + strand, within DORF2077 at 145.543 kb on - strand, within DORF2077 at 145.577 kb on + strand, within DORF2077 at 145.580 kb on + strand at 145.599 kb on + strand at 145.740 kb on + strand, within DVUA0108 at 145.766 kb on - strand, within DVUA0108 at 145.838 kb on + strand, within DVUA0108 at 145.875 kb on + strand, within DVUA0108 at 145.906 kb on - strand, within DVUA0108 at 145.987 kb on + strand, within DVUA0108 at 146.011 kb on + strand, within DVUA0108 at 146.011 kb on + strand, within DVUA0108 at 146.018 kb on + strand, within DVUA0108 at 146.044 kb on + strand, within DVUA0108 at 146.071 kb on - strand, within DVUA0108 at 146.089 kb on - strand, within DVUA0108 at 146.112 kb on - strand, within DVUA0108 at 146.127 kb on - strand, within DVUA0108 at 146.127 kb on - strand, within DVUA0108 at 146.137 kb on + strand, within DVUA0108 at 146.228 kb on - strand at 146.307 kb on + strand, within DVUA0109 at 146.359 kb on - strand, within DVUA0109 at 146.359 kb on - strand, within DVUA0109 at 146.400 kb on - strand, within DVUA0109 at 146.431 kb on + strand, within DVUA0109 at 146.447 kb on + strand, within DVUA0109 at 146.466 kb on + strand, within DVUA0109 at 146.567 kb on + strand, within DVUA0109 at 146.585 kb on - strand, within DVUA0109 at 146.614 kb on - strand, within DVUA0109 at 146.661 kb on + strand at 146.661 kb on + strand at 146.674 kb on - strand at 146.767 kb on + strand at 146.767 kb on + strand at 146.767 kb on + strand at 146.808 kb on + strand, within DVUA0110 at 146.815 kb on - strand, within DVUA0110 at 146.856 kb on + strand, within DVUA0110 at 146.892 kb on + strand, within DVUA0110 at 146.962 kb on - strand, within DVUA0110 at 147.177 kb on + strand, within DVUA0110 at 147.185 kb on - strand, within DVUA0110 at 147.208 kb on - strand, within DVUA0110 at 147.244 kb on - strand, within DVUA0110 at 147.257 kb on + strand, within DVUA0110 at 147.290 kb on - strand, within DVUA0110 at 147.320 kb on - strand, within DVUA0110 at 147.336 kb on - strand, within DVUA0110 at 147.383 kb on + strand, within DVUA0110 at 147.383 kb on + strand, within DVUA0110 at 147.391 kb on - strand, within DVUA0110 at 147.416 kb on - strand, within DVUA0110 at 147.444 kb on - strand, within DVUA0110 at 147.471 kb on + strand, within DVUA0110 at 147.471 kb on + strand, within DVUA0110 at 147.476 kb on + strand, within DVUA0110 at 147.476 kb on + strand, within DVUA0110 at 147.672 kb on - strand at 147.679 kb on + strand at 147.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 145,214 - -0.3 145,335 - -0.3 145,335 - -0.0 145,343 - -1.0 145,400 - DORF2077 0.16 -0.1 145,448 + DORF2077 0.31 -0.3 145,448 + DORF2077 0.31 -0.4 145,466 + DORF2077 0.37 -0.1 145,495 - DORF2077 0.47 +0.5 145,517 + DORF2077 0.54 -0.0 145,543 - DORF2077 0.63 -0.5 145,577 + DORF2077 0.74 +0.5 145,580 + -0.8 145,599 + -0.4 145,740 + DVUA0108 0.26 -0.9 145,766 - DVUA0108 0.30 -0.8 145,838 + DVUA0108 0.42 -0.7 145,875 + DVUA0108 0.48 -0.5 145,906 - DVUA0108 0.52 +1.5 145,987 + DVUA0108 0.66 +0.1 146,011 + DVUA0108 0.69 +0.2 146,011 + DVUA0108 0.69 -1.3 146,018 + DVUA0108 0.71 +0.2 146,044 + DVUA0108 0.75 -0.1 146,071 - DVUA0108 0.79 -0.6 146,089 - DVUA0108 0.82 +0.7 146,112 - DVUA0108 0.86 -1.4 146,127 - DVUA0108 0.88 +0.1 146,127 - DVUA0108 0.88 -0.3 146,137 + DVUA0108 0.90 -0.1 146,228 - +0.5 146,307 + DVUA0109 0.20 -0.2 146,359 - DVUA0109 0.30 -0.8 146,359 - DVUA0109 0.30 +1.1 146,400 - DVUA0109 0.38 +0.7 146,431 + DVUA0109 0.44 -0.0 146,447 + DVUA0109 0.48 +0.3 146,466 + DVUA0109 0.51 -0.9 146,567 + DVUA0109 0.71 +0.1 146,585 - DVUA0109 0.75 +0.4 146,614 - DVUA0109 0.81 +0.3 146,661 + -0.4 146,661 + -0.0 146,674 - -0.8 146,767 + -0.0 146,767 + -1.2 146,767 + +0.3 146,808 + DVUA0110 0.10 -0.3 146,815 - DVUA0110 0.11 -0.2 146,856 + DVUA0110 0.15 -0.0 146,892 + DVUA0110 0.18 +0.2 146,962 - DVUA0110 0.25 +0.9 147,177 + DVUA0110 0.47 +0.1 147,185 - DVUA0110 0.48 -0.2 147,208 - DVUA0110 0.50 -0.0 147,244 - DVUA0110 0.53 +0.2 147,257 + DVUA0110 0.55 -0.6 147,290 - DVUA0110 0.58 -0.7 147,320 - DVUA0110 0.61 +0.0 147,336 - DVUA0110 0.62 -0.2 147,383 + DVUA0110 0.67 -0.9 147,383 + DVUA0110 0.67 -0.1 147,391 - DVUA0110 0.68 +0.2 147,416 - DVUA0110 0.70 +0.8 147,444 - DVUA0110 0.73 -0.3 147,471 + DVUA0110 0.76 +0.1 147,471 + DVUA0110 0.76 -1.0 147,476 + DVUA0110 0.76 -0.5 147,476 + DVUA0110 0.76 -0.3 147,672 - -1.0 147,679 + +1.6 147,689 - -0.1
Or see this region's nucleotide sequence