Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3021 and DVU3022 are separated by 61 nucleotides DVU3022 and atoC overlap by 4 nucleotides
DVU3021: DVU3021 - HDIG domain protein (TIGR), at 3,137,085 to 3,138,455
DVU3021
DVU3022: DVU3022 - sensory box histidine kinase/response regulator (TIGR), at 3,138,517 to 3,141,936
DVU3022
DVU3023: atoC - sigma-54 dependent DNA-binding response regulator (TIGR), at 3,141,933 to 3,143,357
atoC
Position (kb)
3138
3139
3140
3141
3142 Strain fitness (log2 ratio)
-2
-1
0
1 at 3137.527 kb on - strand, within DVU3021 at 3137.550 kb on - strand, within DVU3021 at 3137.593 kb on + strand, within DVU3021 at 3137.632 kb on - strand, within DVU3021 at 3137.646 kb on + strand, within DVU3021 at 3137.654 kb on - strand, within DVU3021 at 3137.683 kb on + strand, within DVU3021 at 3137.720 kb on + strand, within DVU3021 at 3137.728 kb on - strand, within DVU3021 at 3137.768 kb on - strand, within DVU3021 at 3137.846 kb on + strand, within DVU3021 at 3137.862 kb on - strand, within DVU3021 at 3137.888 kb on - strand, within DVU3021 at 3138.103 kb on - strand, within DVU3021 at 3138.119 kb on - strand, within DVU3021 at 3138.119 kb on - strand, within DVU3021 at 3138.156 kb on - strand, within DVU3021 at 3138.161 kb on + strand, within DVU3021 at 3138.167 kb on + strand, within DVU3021 at 3138.169 kb on - strand, within DVU3021 at 3138.175 kb on - strand, within DVU3021 at 3138.175 kb on - strand, within DVU3021 at 3138.241 kb on - strand, within DVU3021 at 3138.272 kb on + strand, within DVU3021 at 3138.280 kb on - strand, within DVU3021 at 3138.402 kb on + strand at 3138.461 kb on + strand at 3140.668 kb on - strand, within DVU3022 at 3141.829 kb on + strand at 3141.918 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 3,137,527 - DVU3021 0.32 -0.8 3,137,550 - DVU3021 0.34 -1.3 3,137,593 + DVU3021 0.37 +0.4 3,137,632 - DVU3021 0.40 +1.2 3,137,646 + DVU3021 0.41 +0.4 3,137,654 - DVU3021 0.42 +1.1 3,137,683 + DVU3021 0.44 -0.6 3,137,720 + DVU3021 0.46 -2.1 3,137,728 - DVU3021 0.47 -0.8 3,137,768 - DVU3021 0.50 -0.3 3,137,846 + DVU3021 0.56 -1.1 3,137,862 - DVU3021 0.57 -0.6 3,137,888 - DVU3021 0.59 +0.1 3,138,103 - DVU3021 0.74 +0.4 3,138,119 - DVU3021 0.75 +0.2 3,138,119 - DVU3021 0.75 -0.1 3,138,156 - DVU3021 0.78 +0.2 3,138,161 + DVU3021 0.78 +0.4 3,138,167 + DVU3021 0.79 -0.2 3,138,169 - DVU3021 0.79 +0.1 3,138,175 - DVU3021 0.80 -0.1 3,138,175 - DVU3021 0.80 -0.0 3,138,241 - DVU3021 0.84 -0.5 3,138,272 + DVU3021 0.87 +0.2 3,138,280 - DVU3021 0.87 +0.4 3,138,402 + -0.1 3,138,461 + -0.7 3,140,668 - DVU3022 0.63 -2.4 3,141,829 + -1.3 3,141,918 - +0.6
Or see this region's nucleotide sequence