Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2341

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntprmA and DVU2340 are separated by 3 nucleotidesDVU2340 and DVU2341 are separated by 10 nucleotidesDVU2341 and DVU2342 are separated by 61 nucleotidesDVU2342 and glnQ are separated by 57 nucleotides DVU2339: prmA - ribosomal protein L11 methyltransferase, putative (TIGR), at 2,435,422 to 2,436,273 prmA DVU2340: DVU2340 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 2,436,277 to 2,436,969 DVU2340 DVU2341: DVU2341 - amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 2,436,980 to 2,437,681 DVU2341 DVU2342: DVU2342 - amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR), at 2,437,743 to 2,438,555 DVU2342 DVU2343: glnQ - amino acid ABC transporter, ATP-binding protein (TIGR), at 2,438,613 to 2,439,341 glnQ Position (kb) 2436 2437 2438Strain fitness (log2 ratio) -1 0 1 2at 2436.045 kb on - strand, within prmAat 2436.064 kb on + strand, within prmAat 2436.153 kb on + strand, within prmAat 2436.223 kb on - strandat 2436.247 kb on + strandat 2436.330 kb on - strandat 2436.557 kb on + strand, within DVU2340at 2436.584 kb on + strand, within DVU2340at 2436.592 kb on - strand, within DVU2340at 2436.592 kb on - strand, within DVU2340at 2436.594 kb on + strand, within DVU2340at 2436.596 kb on + strand, within DVU2340at 2436.646 kb on - strand, within DVU2340at 2436.691 kb on - strand, within DVU2340at 2436.750 kb on + strand, within DVU2340at 2436.840 kb on - strand, within DVU2340at 2436.872 kb on - strand, within DVU2340at 2436.937 kb on + strandat 2436.946 kb on - strandat 2436.962 kb on - strandat 2437.016 kb on - strandat 2437.157 kb on - strand, within DVU2341at 2437.177 kb on + strand, within DVU2341at 2437.236 kb on + strand, within DVU2341at 2437.244 kb on - strand, within DVU2341at 2437.244 kb on - strand, within DVU2341at 2437.408 kb on + strand, within DVU2341at 2437.416 kb on - strand, within DVU2341at 2437.421 kb on + strand, within DVU2341at 2437.554 kb on + strand, within DVU2341at 2437.589 kb on + strand, within DVU2341at 2437.616 kb on + strandat 2437.621 kb on + strandat 2437.624 kb on - strandat 2437.730 kb on + strandat 2437.845 kb on - strand, within DVU2342at 2437.898 kb on + strand, within DVU2342at 2437.913 kb on + strand, within DVU2342at 2437.997 kb on - strand, within DVU2342at 2438.014 kb on + strand, within DVU2342at 2438.014 kb on + strand, within DVU2342at 2438.024 kb on + strand, within DVU2342at 2438.024 kb on + strand, within DVU2342at 2438.024 kb on + strand, within DVU2342at 2438.117 kb on - strand, within DVU2342at 2438.148 kb on - strand, within DVU2342at 2438.190 kb on + strand, within DVU2342at 2438.198 kb on - strand, within DVU2342at 2438.278 kb on + strand, within DVU2342at 2438.323 kb on + strand, within DVU2342at 2438.331 kb on - strand, within DVU2342at 2438.331 kb on - strand, within DVU2342at 2438.342 kb on + strand, within DVU2342at 2438.360 kb on - strand, within DVU2342at 2438.438 kb on + strand, within DVU2342at 2438.513 kb on + strandat 2438.635 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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2,436,045 - prmA DVU2339 0.73 -0.2
2,436,064 + prmA DVU2339 0.75 -0.0
2,436,153 + prmA DVU2339 0.86 -0.9
2,436,223 - -0.5
2,436,247 + -0.9
2,436,330 - -0.5
2,436,557 + DVU2340 0.40 +0.7
2,436,584 + DVU2340 0.44 -0.1
2,436,592 - DVU2340 0.45 +0.0
2,436,592 - DVU2340 0.45 -0.0
2,436,594 + DVU2340 0.46 -0.1
2,436,596 + DVU2340 0.46 +0.5
2,436,646 - DVU2340 0.53 -1.4
2,436,691 - DVU2340 0.60 +0.5
2,436,750 + DVU2340 0.68 -0.6
2,436,840 - DVU2340 0.81 -0.1
2,436,872 - DVU2340 0.86 +0.1
2,436,937 + +0.0
2,436,946 - -0.8
2,436,962 - -1.2
2,437,016 - +0.2
2,437,157 - DVU2341 0.25 -1.1
2,437,177 + DVU2341 0.28 -0.6
2,437,236 + DVU2341 0.36 -1.0
2,437,244 - DVU2341 0.38 -1.7
2,437,244 - DVU2341 0.38 -1.0
2,437,408 + DVU2341 0.61 -1.0
2,437,416 - DVU2341 0.62 +0.2
2,437,421 + DVU2341 0.63 -1.1
2,437,554 + DVU2341 0.82 -0.2
2,437,589 + DVU2341 0.87 -1.0
2,437,616 + -0.9
2,437,621 + -0.4
2,437,624 - +0.2
2,437,730 + -1.1
2,437,845 - DVU2342 0.13 -0.2
2,437,898 + DVU2342 0.19 -0.5
2,437,913 + DVU2342 0.21 -0.3
2,437,997 - DVU2342 0.31 +2.3
2,438,014 + DVU2342 0.33 -0.3
2,438,014 + DVU2342 0.33 +0.2
2,438,024 + DVU2342 0.35 +0.2
2,438,024 + DVU2342 0.35 +0.3
2,438,024 + DVU2342 0.35 -0.5
2,438,117 - DVU2342 0.46 +0.4
2,438,148 - DVU2342 0.50 -0.0
2,438,190 + DVU2342 0.55 -1.6
2,438,198 - DVU2342 0.56 +0.4
2,438,278 + DVU2342 0.66 +0.4
2,438,323 + DVU2342 0.71 +1.0
2,438,331 - DVU2342 0.72 +0.3
2,438,331 - DVU2342 0.72 -0.6
2,438,342 + DVU2342 0.74 +0.4
2,438,360 - DVU2342 0.76 +0.5
2,438,438 + DVU2342 0.85 +0.6
2,438,513 + +0.3
2,438,635 + -1.5

Or see this region's nucleotide sequence