Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2222

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2218 and DVU2220 are separated by 374 nucleotidesDVU2220 and DVU2221 are separated by 45 nucleotidesDVU2221 and ssb are separated by 4 nucleotidesssb and DVU2223 are separated by 39 nucleotidesDVU2223 and DVU2224 are separated by 2 nucleotides DVU2218: DVU2218 - GTP-binding protein, putative (TIGR), at 2,313,101 to 2,314,147 DVU2218 DVU2220: DVU2220 - conserved hypothetical protein (TIGR), at 2,314,522 to 2,314,791 DVU2220 DVU2221: DVU2221 - hypothetical protein (TIGR), at 2,314,837 to 2,314,977 DVU2221 DVU2222: ssb - single-strand binding protein (TIGR), at 2,314,982 to 2,315,512 ssb DVU2223: DVU2223 - hypothetical protein (TIGR), at 2,315,552 to 2,315,896 DVU2223 DVU2224: DVU2224 - hypothetical protein (TIGR), at 2,315,899 to 2,316,549 DVU2224 Position (kb) 2314 2315 2316Strain fitness (log2 ratio) -3 -2 -1 0 1at 2314.016 kb on - strand, within DVU2218at 2314.059 kb on + strandat 2314.159 kb on - strandat 2314.207 kb on + strandat 2314.334 kb on + strandat 2314.342 kb on - strandat 2314.451 kb on - strandat 2314.650 kb on - strand, within DVU2220at 2314.906 kb on - strand, within DVU2221at 2314.980 kb on + strandat 2315.638 kb on + strand, within DVU2223at 2315.720 kb on - strand, within DVU2223at 2315.824 kb on - strand, within DVU2223at 2315.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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2,314,016 - DVU2218 0.87 +0.8
2,314,059 + +0.0
2,314,159 - -2.8
2,314,207 + -1.5
2,314,334 + -0.4
2,314,342 - -1.3
2,314,451 - -1.4
2,314,650 - DVU2220 0.47 -0.5
2,314,906 - DVU2221 0.49 +0.2
2,314,980 + -0.9
2,315,638 + DVU2223 0.25 +0.5
2,315,720 - DVU2223 0.49 -2.1
2,315,824 - DVU2223 0.79 -2.8
2,315,879 - +0.4

Or see this region's nucleotide sequence