Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1353

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1351 and DVU1352 are separated by 129 nucleotidesDVU1352 and dnaE are separated by 1 nucleotidesdnaE and DVU1355 are separated by 477 nucleotidesDVU1355 and DVU1356 are separated by 7 nucleotides DVU1351: DVU1351 - membrane protein, MarC family (TIGR), at 1,429,780 to 1,430,382 DVU1351 DVU1352: DVU1352 - 6-pyruvoyl tetrahydrobiopterin synthase, putative (TIGR), at 1,430,512 to 1,430,901 DVU1352 DVU1353: dnaE - DNA polymerase III, alpha subunit (TIGR), at 1,430,903 to 1,434,397 dnaE DVU1355: DVU1355 - hypothetical protein (TIGR), at 1,434,875 to 1,435,243 DVU1355 DVU1356: DVU1356 - HD domain protein (TIGR), at 1,435,251 to 1,436,054 DVU1356 Position (kb) 1430 1431 1432 1433 1434 1435Strain fitness (log2 ratio) -2 -1 0 1at 1429.982 kb on - strand, within DVU1351at 1429.998 kb on + strand, within DVU1351at 1430.020 kb on + strand, within DVU1351at 1430.379 kb on + strandat 1430.419 kb on - strandat 1434.464 kb on + strandat 1434.472 kb on - strandat 1434.472 kb on - strandat 1434.484 kb on + strandat 1434.484 kb on + strandat 1434.739 kb on + strandat 1434.739 kb on + strandat 1434.739 kb on + strandat 1434.747 kb on - strandat 1434.754 kb on + strandat 1434.754 kb on + strandat 1434.754 kb on + strandat 1434.762 kb on - strandat 1434.762 kb on - strandat 1434.773 kb on + strandat 1434.781 kb on - strandat 1434.956 kb on + strand, within DVU1355at 1434.992 kb on + strand, within DVU1355at 1435.023 kb on - strand, within DVU1355at 1435.093 kb on - strand, within DVU1355at 1435.167 kb on - strand, within DVU1355at 1435.206 kb on - strand, within DVU1355at 1435.211 kb on - strandat 1435.211 kb on - strandat 1435.265 kb on - strandat 1435.335 kb on + strand, within DVU1356at 1435.352 kb on + strand, within DVU1356at 1435.352 kb on + strand, within DVU1356at 1435.360 kb on - strand, within DVU1356at 1435.360 kb on - strand, within DVU1356

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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1,429,982 - DVU1351 0.33 -1.5
1,429,998 + DVU1351 0.36 -0.2
1,430,020 + DVU1351 0.40 +0.5
1,430,379 + -1.6
1,430,419 - +0.2
1,434,464 + -0.5
1,434,472 - +0.5
1,434,472 - -0.5
1,434,484 + -0.6
1,434,484 + -2.4
1,434,739 + +0.4
1,434,739 + -1.0
1,434,739 + -0.5
1,434,747 - -0.1
1,434,754 + +0.3
1,434,754 + -0.6
1,434,754 + +0.1
1,434,762 - +0.1
1,434,762 - -0.3
1,434,773 + -0.5
1,434,781 - -0.5
1,434,956 + DVU1355 0.22 -0.2
1,434,992 + DVU1355 0.32 -0.2
1,435,023 - DVU1355 0.40 -0.5
1,435,093 - DVU1355 0.59 -0.2
1,435,167 - DVU1355 0.79 +1.0
1,435,206 - DVU1355 0.90 -0.5
1,435,211 - -1.2
1,435,211 - -0.1
1,435,265 - -1.0
1,435,335 + DVU1356 0.10 +0.9
1,435,352 + DVU1356 0.13 +0.0
1,435,352 + DVU1356 0.13 -0.5
1,435,360 - DVU1356 0.14 +0.8
1,435,360 - DVU1356 0.14 +0.2

Or see this region's nucleotide sequence