Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1102 and DVU1103 are separated by 4 nucleotides DVU1103 and DVU1104 overlap by 4 nucleotides DVU1104 and DVU1105 overlap by 14 nucleotides DVU1105 and DVU1106 are separated by 145 nucleotides
DVU1102: DVU1102 - baseplate assembly protein, putative (TIGR), at 1,208,201 to 1,209,355
DVU1102
DVU1103: DVU1103 - baseplate assembly protein, putative (TIGR), at 1,209,360 to 1,209,794
DVU1103
DVU1104: DVU1104 - baseplate assembly protein, putative (TIGR), at 1,209,791 to 1,210,522
DVU1104
DVU1105: DVU1105 - hypothetical protein (TIGR), at 1,210,509 to 1,211,309
DVU1105
DVU1106: DVU1106 - hypothetical protein (TIGR), at 1,211,455 to 1,212,006
DVU1106
Position (kb)
1209
1210
1211 Strain fitness (log2 ratio)
-2
-1
0
1 at 1208.814 kb on - strand, within DVU1102 at 1208.904 kb on + strand, within DVU1102 at 1208.904 kb on + strand, within DVU1102 at 1208.910 kb on + strand, within DVU1102 at 1208.912 kb on - strand, within DVU1102 at 1208.920 kb on + strand, within DVU1102 at 1208.920 kb on + strand, within DVU1102 at 1208.925 kb on + strand, within DVU1102 at 1208.925 kb on + strand, within DVU1102 at 1208.959 kb on + strand, within DVU1102 at 1209.031 kb on + strand, within DVU1102 at 1209.071 kb on + strand, within DVU1102 at 1209.087 kb on - strand, within DVU1102 at 1209.113 kb on + strand, within DVU1102 at 1209.125 kb on - strand, within DVU1102 at 1209.139 kb on + strand, within DVU1102 at 1209.148 kb on + strand, within DVU1102 at 1209.287 kb on + strand at 1209.315 kb on + strand at 1209.315 kb on + strand at 1209.334 kb on + strand at 1209.342 kb on - strand at 1209.357 kb on + strand at 1209.365 kb on - strand at 1209.400 kb on + strand at 1209.414 kb on - strand, within DVU1103 at 1209.474 kb on - strand, within DVU1103 at 1209.566 kb on - strand, within DVU1103 at 1209.568 kb on - strand, within DVU1103 at 1209.625 kb on - strand, within DVU1103 at 1209.627 kb on + strand, within DVU1103 at 1209.627 kb on + strand, within DVU1103 at 1209.640 kb on + strand, within DVU1103 at 1209.648 kb on + strand, within DVU1103 at 1209.771 kb on + strand at 1209.779 kb on - strand at 1209.779 kb on - strand at 1209.950 kb on + strand, within DVU1104 at 1209.958 kb on - strand, within DVU1104 at 1210.027 kb on - strand, within DVU1104 at 1210.051 kb on - strand, within DVU1104 at 1210.236 kb on + strand, within DVU1104 at 1210.294 kb on + strand, within DVU1104 at 1210.294 kb on + strand, within DVU1104 at 1210.299 kb on + strand, within DVU1104 at 1210.325 kb on + strand, within DVU1104 at 1210.470 kb on + strand at 1210.488 kb on - strand at 1210.526 kb on - strand at 1210.531 kb on - strand at 1210.552 kb on - strand at 1210.554 kb on - strand at 1210.622 kb on + strand, within DVU1105 at 1210.632 kb on + strand, within DVU1105 at 1210.637 kb on + strand, within DVU1105 at 1210.654 kb on - strand, within DVU1105 at 1210.659 kb on + strand, within DVU1105 at 1210.699 kb on + strand, within DVU1105 at 1210.702 kb on + strand, within DVU1105 at 1210.710 kb on - strand, within DVU1105 at 1210.741 kb on - strand, within DVU1105 at 1210.864 kb on + strand, within DVU1105 at 1210.864 kb on + strand, within DVU1105 at 1210.872 kb on - strand, within DVU1105 at 1210.996 kb on + strand, within DVU1105 at 1211.029 kb on - strand, within DVU1105 at 1211.048 kb on + strand, within DVU1105 at 1211.080 kb on - strand, within DVU1105 at 1211.092 kb on + strand, within DVU1105 at 1211.138 kb on - strand, within DVU1105 at 1211.304 kb on - strand at 1211.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 1,208,814 - DVU1102 0.53 -0.2 1,208,904 + DVU1102 0.61 +0.1 1,208,904 + DVU1102 0.61 -0.6 1,208,910 + DVU1102 0.61 -0.2 1,208,912 - DVU1102 0.62 -0.0 1,208,920 + DVU1102 0.62 -0.7 1,208,920 + DVU1102 0.62 -0.1 1,208,925 + DVU1102 0.63 -0.4 1,208,925 + DVU1102 0.63 -0.9 1,208,959 + DVU1102 0.66 +0.9 1,209,031 + DVU1102 0.72 -0.8 1,209,071 + DVU1102 0.75 -0.3 1,209,087 - DVU1102 0.77 -0.1 1,209,113 + DVU1102 0.79 -0.5 1,209,125 - DVU1102 0.80 -1.1 1,209,139 + DVU1102 0.81 +0.3 1,209,148 + DVU1102 0.82 +0.3 1,209,287 + +1.6 1,209,315 + -1.0 1,209,315 + -0.6 1,209,334 + -1.1 1,209,342 - -2.1 1,209,357 + +0.4 1,209,365 - +0.0 1,209,400 + -0.8 1,209,414 - DVU1103 0.12 +0.4 1,209,474 - DVU1103 0.26 -0.8 1,209,566 - DVU1103 0.47 +0.2 1,209,568 - DVU1103 0.48 -0.1 1,209,625 - DVU1103 0.61 -0.1 1,209,627 + DVU1103 0.61 -0.3 1,209,627 + DVU1103 0.61 +0.3 1,209,640 + DVU1103 0.64 -0.4 1,209,648 + DVU1103 0.66 +0.4 1,209,771 + +0.2 1,209,779 - -1.6 1,209,779 - +0.0 1,209,950 + DVU1104 0.22 +0.9 1,209,958 - DVU1104 0.23 -0.3 1,210,027 - DVU1104 0.32 -0.1 1,210,051 - DVU1104 0.36 +0.3 1,210,236 + DVU1104 0.61 -0.6 1,210,294 + DVU1104 0.69 +1.1 1,210,294 + DVU1104 0.69 +0.2 1,210,299 + DVU1104 0.69 -0.1 1,210,325 + DVU1104 0.73 -0.5 1,210,470 + -0.6 1,210,488 - +0.5 1,210,526 - -0.5 1,210,531 - -1.4 1,210,552 - +0.1 1,210,554 - -0.1 1,210,622 + DVU1105 0.14 +0.8 1,210,632 + DVU1105 0.15 +1.0 1,210,637 + DVU1105 0.16 -0.7 1,210,654 - DVU1105 0.18 -0.5 1,210,659 + DVU1105 0.19 +0.7 1,210,699 + DVU1105 0.24 +0.4 1,210,702 + DVU1105 0.24 -0.8 1,210,710 - DVU1105 0.25 +0.3 1,210,741 - DVU1105 0.29 -0.7 1,210,864 + DVU1105 0.44 -0.1 1,210,864 + DVU1105 0.44 -0.6 1,210,872 - DVU1105 0.45 -0.3 1,210,996 + DVU1105 0.61 -0.2 1,211,029 - DVU1105 0.65 -0.8 1,211,048 + DVU1105 0.67 -0.8 1,211,080 - DVU1105 0.71 -0.7 1,211,092 + DVU1105 0.73 -0.0 1,211,138 - DVU1105 0.79 -1.4 1,211,304 - +0.2 1,211,304 - +0.2
Or see this region's nucleotide sequence