Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cbhK and DVU0989 are separated by 9 nucleotides DVU0989 and nth are separated by 204 nucleotides
DVU0988: cbhK - carbohydrate kinase, PfkB family (TIGR), at 1,082,842 to 1,083,768
cbhK
DVU0989: DVU0989 - periplasmic divalent cation tolerance protein cutA, putative (TIGR), at 1,083,778 to 1,084,128
DVU0989
DVU0990: nth - endonuclease III, putative (TIGR), at 1,084,333 to 1,085,190
nth
Position (kb)
1083
1084
1085 Strain fitness (log2 ratio)
-2
-1
0
1 at 1082.784 kb on + strand at 1082.784 kb on + strand at 1082.866 kb on - strand at 1082.896 kb on - strand at 1082.904 kb on - strand at 1082.967 kb on + strand, within cbhK at 1082.967 kb on + strand, within cbhK at 1082.975 kb on - strand, within cbhK at 1082.975 kb on - strand, within cbhK at 1082.975 kb on - strand, within cbhK at 1083.046 kb on + strand, within cbhK at 1083.082 kb on + strand, within cbhK at 1083.196 kb on + strand, within cbhK at 1083.447 kb on + strand, within cbhK at 1083.568 kb on + strand, within cbhK at 1083.601 kb on + strand, within cbhK at 1083.601 kb on + strand, within cbhK at 1083.611 kb on + strand, within cbhK at 1083.611 kb on + strand, within cbhK at 1083.657 kb on - strand, within cbhK at 1083.766 kb on - strand at 1083.862 kb on + strand, within DVU0989 at 1083.875 kb on - strand, within DVU0989 at 1083.900 kb on - strand, within DVU0989 at 1083.953 kb on + strand, within DVU0989 at 1083.986 kb on - strand, within DVU0989 at 1084.039 kb on + strand, within DVU0989 at 1084.050 kb on + strand, within DVU0989 at 1084.069 kb on + strand, within DVU0989 at 1084.099 kb on + strand at 1084.120 kb on + strand at 1084.120 kb on + strand at 1084.128 kb on - strand at 1084.186 kb on + strand at 1084.188 kb on + strand at 1084.249 kb on + strand at 1084.394 kb on + strand at 1084.462 kb on + strand, within nth at 1084.536 kb on + strand, within nth at 1084.536 kb on + strand, within nth at 1084.536 kb on + strand, within nth at 1084.536 kb on + strand, within nth at 1084.544 kb on - strand, within nth at 1084.544 kb on - strand, within nth at 1084.556 kb on + strand, within nth at 1084.589 kb on + strand, within nth at 1084.592 kb on - strand, within nth at 1084.626 kb on + strand, within nth at 1084.664 kb on + strand, within nth at 1084.719 kb on + strand, within nth at 1084.795 kb on - strand, within nth at 1084.805 kb on + strand, within nth at 1084.866 kb on - strand, within nth at 1084.921 kb on - strand, within nth at 1084.933 kb on - strand, within nth at 1085.018 kb on + strand, within nth at 1085.042 kb on - strand, within nth
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 1,082,784 + -1.6 1,082,784 + -0.1 1,082,866 - -0.7 1,082,896 - -0.5 1,082,904 - +0.1 1,082,967 + cbhK DVU0988 0.13 -0.2 1,082,967 + cbhK DVU0988 0.13 +1.0 1,082,975 - cbhK DVU0988 0.14 +1.4 1,082,975 - cbhK DVU0988 0.14 +0.2 1,082,975 - cbhK DVU0988 0.14 +0.1 1,083,046 + cbhK DVU0988 0.22 -0.2 1,083,082 + cbhK DVU0988 0.26 -0.8 1,083,196 + cbhK DVU0988 0.38 -0.1 1,083,447 + cbhK DVU0988 0.65 +0.0 1,083,568 + cbhK DVU0988 0.78 -1.0 1,083,601 + cbhK DVU0988 0.82 +0.9 1,083,601 + cbhK DVU0988 0.82 -0.9 1,083,611 + cbhK DVU0988 0.83 -0.4 1,083,611 + cbhK DVU0988 0.83 -0.2 1,083,657 - cbhK DVU0988 0.88 -0.3 1,083,766 - +0.0 1,083,862 + DVU0989 0.24 -0.7 1,083,875 - DVU0989 0.28 +0.8 1,083,900 - DVU0989 0.35 -0.2 1,083,953 + DVU0989 0.50 +0.3 1,083,986 - DVU0989 0.59 +0.2 1,084,039 + DVU0989 0.74 -1.0 1,084,050 + DVU0989 0.77 -0.5 1,084,069 + DVU0989 0.83 +0.1 1,084,099 + +0.2 1,084,120 + -0.2 1,084,120 + -1.9 1,084,128 - +0.3 1,084,186 + -0.1 1,084,188 + -0.6 1,084,249 + -0.2 1,084,394 + -0.4 1,084,462 + nth DVU0990 0.15 -0.2 1,084,536 + nth DVU0990 0.24 -0.0 1,084,536 + nth DVU0990 0.24 +0.3 1,084,536 + nth DVU0990 0.24 -0.2 1,084,536 + nth DVU0990 0.24 -0.2 1,084,544 - nth DVU0990 0.25 -0.6 1,084,544 - nth DVU0990 0.25 +0.9 1,084,556 + nth DVU0990 0.26 -0.5 1,084,589 + nth DVU0990 0.30 -1.8 1,084,592 - nth DVU0990 0.30 -0.8 1,084,626 + nth DVU0990 0.34 +1.1 1,084,664 + nth DVU0990 0.39 -0.6 1,084,719 + nth DVU0990 0.45 -1.0 1,084,795 - nth DVU0990 0.54 -0.8 1,084,805 + nth DVU0990 0.55 -1.1 1,084,866 - nth DVU0990 0.62 +0.2 1,084,921 - nth DVU0990 0.69 +0.4 1,084,933 - nth DVU0990 0.70 -0.7 1,085,018 + nth DVU0990 0.80 -0.6 1,085,042 - nth DVU0990 0.83 -0.7
Or see this region's nucleotide sequence