Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0959

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsF and rpsR are separated by 0 nucleotidesrpsR and rplI are separated by 12 nucleotidesrplI and dnaB overlap by 50 nucleotidesdnaB and DVU0961 are separated by 401 nucleotides DVU0956: rpsF - ribosomal protein S6 (TIGR), at 1,051,480 to 1,051,785 rpsF DVU0957: rpsR - ribosomal protein S18 (TIGR), at 1,051,786 to 1,052,049 rpsR DVU0958: rplI - ribosomal protein L9 (TIGR), at 1,052,062 to 1,052,565 rplI DVU0959: dnaB - replicative DNA helicase (TIGR), at 1,052,516 to 1,053,997 dnaB DVU0961: DVU0961 - conserved hypothetical protein (TIGR), at 1,054,399 to 1,058,463 DVU0961 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -2 -1 0 1at 1054.089 kb on + strandat 1054.089 kb on + strandat 1054.121 kb on - strandat 1054.191 kb on - strandat 1054.287 kb on + strandat 1054.295 kb on + strandat 1054.311 kb on + strandat 1054.311 kb on + strandat 1054.321 kb on - strandat 1054.323 kb on + strandat 1054.323 kb on + strandat 1054.364 kb on + strandat 1054.459 kb on - strandat 1054.505 kb on + strandat 1054.609 kb on + strandat 1054.617 kb on - strandat 1054.785 kb on + strandat 1054.856 kb on + strand, within DVU0961at 1054.865 kb on - strand, within DVU0961at 1054.989 kb on - strand, within DVU0961

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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1,054,089 + -1.1
1,054,089 + -0.1
1,054,121 - -0.8
1,054,191 - -0.5
1,054,287 + -0.8
1,054,295 + +0.0
1,054,311 + -1.0
1,054,311 + +0.3
1,054,321 - -0.0
1,054,323 + -1.0
1,054,323 + -1.9
1,054,364 + +0.7
1,054,459 - -0.3
1,054,505 + -0.2
1,054,609 + +0.3
1,054,617 - -0.2
1,054,785 + -0.2
1,054,856 + DVU0961 0.11 +0.5
1,054,865 - DVU0961 0.11 -0.3
1,054,989 - DVU0961 0.15 +0.5

Or see this region's nucleotide sequence