Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0733

Experiment: MoYLS4 with DMSO 7.5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntvalS and DVU0733 are separated by 116 nucleotidesDVU0733 and cysG-1 are separated by 234 nucleotides DVU0732: valS - valyl-tRNA synthetase (TIGR), at 816,473 to 819,127 valS DVU0733: DVU0733 - conserved hypothetical protein (TIGR), at 819,244 to 819,732 DVU0733 DVU0734: cysG-1 - uroporphyrinogen III synthase/methyltransferase (TIGR), at 819,967 to 821,478 cysG-1 Position (kb) 819 820Strain fitness (log2 ratio) -1 0 1at 819.137 kb on - strandat 819.251 kb on - strandat 819.361 kb on + strand, within DVU0733at 819.449 kb on - strand, within DVU0733at 819.485 kb on - strand, within DVU0733at 819.497 kb on - strand, within DVU0733at 819.541 kb on - strand, within DVU0733at 819.546 kb on - strand, within DVU0733at 819.583 kb on - strand, within DVU0733at 819.584 kb on + strand, within DVU0733at 819.589 kb on + strand, within DVU0733at 819.601 kb on + strand, within DVU0733at 819.601 kb on + strand, within DVU0733at 819.751 kb on - strandat 819.866 kb on + strandat 819.866 kb on + strandat 819.866 kb on + strandat 819.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5%
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819,137 - -0.4
819,251 - -0.2
819,361 + DVU0733 0.24 +0.5
819,449 - DVU0733 0.42 +0.4
819,485 - DVU0733 0.49 +0.1
819,497 - DVU0733 0.52 -0.2
819,541 - DVU0733 0.61 +0.3
819,546 - DVU0733 0.62 +0.4
819,583 - DVU0733 0.69 -0.9
819,584 + DVU0733 0.70 +0.7
819,589 + DVU0733 0.71 -0.0
819,601 + DVU0733 0.73 +0.8
819,601 + DVU0733 0.73 -0.3
819,751 - -0.7
819,866 + -1.0
819,866 + -0.6
819,866 + +1.3
819,874 - +0.1

Or see this region's nucleotide sequence