Experiment: MoYLS4 with DMSO 7.5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt accC and DVU2227 overlap by 20 nucleotides DVU2227 and DVU2228 are separated by 4 nucleotides DVU2228 and motA-2 overlap by 17 nucleotides
DVU2226: accC - acetyl-CoA carboxylase, biotin carboxylase, putative (TIGR), at 2,318,897 to 2,320,312
accC
DVU2227: DVU2227 - hypothetical protein (TIGR), at 2,320,293 to 2,320,736
DVU2227
DVU2228: DVU2228 - motB protein, putative (TIGR), at 2,320,741 to 2,321,475
DVU2228
DVU2229: motA-2 - chemotaxis protein MotA (TIGR), at 2,321,459 to 2,322,220
motA-2
Position (kb)
2320
2321 Strain fitness (log2 ratio)
-2
-1
0
1 at 2320.431 kb on + strand, within DVU2227 at 2320.439 kb on - strand, within DVU2227 at 2320.534 kb on + strand, within DVU2227 at 2320.537 kb on - strand, within DVU2227 at 2320.570 kb on + strand, within DVU2227 at 2320.588 kb on - strand, within DVU2227 at 2320.663 kb on + strand, within DVU2227 at 2320.663 kb on + strand, within DVU2227 at 2320.673 kb on + strand, within DVU2227 at 2320.673 kb on + strand, within DVU2227 at 2320.673 kb on + strand, within DVU2227 at 2320.673 kb on + strand, within DVU2227 at 2320.689 kb on - strand, within DVU2227 at 2320.769 kb on + strand at 2320.769 kb on + strand at 2320.800 kb on + strand at 2320.939 kb on - strand, within DVU2228 at 2320.954 kb on + strand, within DVU2228 at 2321.044 kb on - strand, within DVU2228 at 2321.058 kb on + strand, within DVU2228 at 2321.093 kb on - strand, within DVU2228 at 2321.120 kb on - strand, within DVU2228 at 2321.152 kb on + strand, within DVU2228 at 2321.228 kb on + strand, within DVU2228 at 2321.236 kb on - strand, within DVU2228 at 2321.236 kb on - strand, within DVU2228 at 2321.529 kb on + strand at 2321.576 kb on - strand, within motA-2 at 2321.587 kb on - strand, within motA-2 at 2321.604 kb on + strand, within motA-2 at 2321.612 kb on - strand, within motA-2 at 2321.613 kb on - strand, within motA-2 at 2321.663 kb on - strand, within motA-2 at 2321.681 kb on + strand, within motA-2 at 2321.692 kb on + strand, within motA-2
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 7.5% remove 2,320,431 + DVU2227 0.31 +0.2 2,320,439 - DVU2227 0.33 -0.4 2,320,534 + DVU2227 0.54 -1.7 2,320,537 - DVU2227 0.55 -0.2 2,320,570 + DVU2227 0.62 +0.9 2,320,588 - DVU2227 0.66 -1.9 2,320,663 + DVU2227 0.83 -1.3 2,320,663 + DVU2227 0.83 -0.6 2,320,673 + DVU2227 0.86 -0.4 2,320,673 + DVU2227 0.86 -0.4 2,320,673 + DVU2227 0.86 +0.9 2,320,673 + DVU2227 0.86 -0.7 2,320,689 - DVU2227 0.89 -1.2 2,320,769 + +0.3 2,320,769 + -2.0 2,320,800 + -0.7 2,320,939 - DVU2228 0.27 +0.5 2,320,954 + DVU2228 0.29 -0.1 2,321,044 - DVU2228 0.41 -0.6 2,321,058 + DVU2228 0.43 +0.3 2,321,093 - DVU2228 0.48 -1.0 2,321,120 - DVU2228 0.52 +0.7 2,321,152 + DVU2228 0.56 +0.0 2,321,228 + DVU2228 0.66 +0.3 2,321,236 - DVU2228 0.67 -0.4 2,321,236 - DVU2228 0.67 -1.3 2,321,529 + -0.0 2,321,576 - motA-2 DVU2229 0.15 -0.2 2,321,587 - motA-2 DVU2229 0.17 -1.6 2,321,604 + motA-2 DVU2229 0.19 -0.5 2,321,612 - motA-2 DVU2229 0.20 -1.5 2,321,613 - motA-2 DVU2229 0.20 -1.0 2,321,663 - motA-2 DVU2229 0.27 -0.4 2,321,681 + motA-2 DVU2229 0.29 +0.7 2,321,692 + motA-2 DVU2229 0.31 +0.3
Or see this region's nucleotide sequence