Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0063.1 and DVUA0064 are separated by 67 nucleotides DVUA0064 and DVUA0065 overlap by 4 nucleotides
DVUA0063.1: DVUA0063.1 - SEED: FIG00604587: hypothetical protein, at 80,089 to 81,096
DVUA0063.1
DVUA0064: DVUA0064 - conserved domain protein (TIGR), at 81,164 to 82,885
DVUA0064
DVUA0065: DVUA0065 - sensor histidine kinase (TIGR), at 82,882 to 84,918
DVUA0065
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.225 kb on - strand, within DVUA0063.1 at 80.421 kb on + strand, within DVUA0063.1 at 80.468 kb on - strand, within DVUA0063.1 at 80.477 kb on - strand, within DVUA0063.1 at 80.505 kb on + strand, within DVUA0063.1 at 80.505 kb on + strand, within DVUA0063.1 at 80.513 kb on - strand, within DVUA0063.1 at 80.513 kb on - strand, within DVUA0063.1 at 80.528 kb on + strand, within DVUA0063.1 at 80.559 kb on - strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.568 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.615 kb on - strand, within DVUA0063.1 at 80.936 kb on - strand, within DVUA0063.1 at 80.951 kb on + strand, within DVUA0063.1 at 81.107 kb on + strand at 81.216 kb on + strand at 81.288 kb on - strand at 81.291 kb on + strand at 81.301 kb on + strand at 81.309 kb on - strand at 81.312 kb on + strand at 81.356 kb on + strand, within DVUA0064 at 81.359 kb on - strand, within DVUA0064 at 81.389 kb on - strand, within DVUA0064 at 81.533 kb on - strand, within DVUA0064 at 81.573 kb on - strand, within DVUA0064 at 81.625 kb on + strand, within DVUA0064 at 81.625 kb on + strand, within DVUA0064 at 81.752 kb on - strand, within DVUA0064 at 81.787 kb on - strand, within DVUA0064 at 81.853 kb on - strand, within DVUA0064 at 81.938 kb on - strand, within DVUA0064 at 81.970 kb on - strand, within DVUA0064 at 82.022 kb on + strand, within DVUA0064 at 82.045 kb on - strand, within DVUA0064 at 82.066 kb on - strand, within DVUA0064 at 82.202 kb on - strand, within DVUA0064 at 82.436 kb on + strand, within DVUA0064 at 82.438 kb on - strand, within DVUA0064 at 82.457 kb on + strand, within DVUA0064 at 82.473 kb on + strand, within DVUA0064 at 82.475 kb on + strand, within DVUA0064 at 82.499 kb on + strand, within DVUA0064 at 82.529 kb on + strand, within DVUA0064 at 82.529 kb on + strand, within DVUA0064 at 82.531 kb on + strand, within DVUA0064 at 82.531 kb on + strand, within DVUA0064 at 82.719 kb on - strand at 82.816 kb on + strand at 82.878 kb on + strand at 82.920 kb on - strand at 83.055 kb on - strand at 83.123 kb on - strand, within DVUA0065 at 83.272 kb on - strand, within DVUA0065 at 83.435 kb on + strand, within DVUA0065 at 83.443 kb on - strand, within DVUA0065 at 83.443 kb on - strand, within DVUA0065 at 83.471 kb on + strand, within DVUA0065 at 83.481 kb on + strand, within DVUA0065 at 83.639 kb on - strand, within DVUA0065 at 83.756 kb on - strand, within DVUA0065 at 83.793 kb on + strand, within DVUA0065 at 83.811 kb on - strand, within DVUA0065 at 83.836 kb on - strand, within DVUA0065 at 83.870 kb on + strand, within DVUA0065
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 80,225 - DVUA0063.1 0.13 +0.3 80,421 + DVUA0063.1 0.33 +0.6 80,468 - DVUA0063.1 0.38 -0.2 80,477 - DVUA0063.1 0.38 +0.1 80,505 + DVUA0063.1 0.41 -0.0 80,505 + DVUA0063.1 0.41 +0.5 80,513 - DVUA0063.1 0.42 -0.8 80,513 - DVUA0063.1 0.42 -0.9 80,528 + DVUA0063.1 0.44 -1.5 80,559 - DVUA0063.1 0.47 +0.1 80,561 + DVUA0063.1 0.47 -0.6 80,561 + DVUA0063.1 0.47 +1.5 80,561 + DVUA0063.1 0.47 +0.1 80,568 - DVUA0063.1 0.48 +1.3 80,569 - DVUA0063.1 0.48 +1.4 80,569 - DVUA0063.1 0.48 +0.0 80,569 - DVUA0063.1 0.48 +0.2 80,615 - DVUA0063.1 0.52 -0.5 80,936 - DVUA0063.1 0.84 +0.1 80,951 + DVUA0063.1 0.86 -1.6 81,107 + -0.2 81,216 + -0.0 81,288 - +1.5 81,291 + +1.5 81,301 + +0.1 81,309 - +0.7 81,312 + +0.5 81,356 + DVUA0064 0.11 +0.5 81,359 - DVUA0064 0.11 -0.3 81,389 - DVUA0064 0.13 +0.1 81,533 - DVUA0064 0.21 +0.0 81,573 - DVUA0064 0.24 +1.1 81,625 + DVUA0064 0.27 +0.0 81,625 + DVUA0064 0.27 -1.1 81,752 - DVUA0064 0.34 -0.9 81,787 - DVUA0064 0.36 +0.1 81,853 - DVUA0064 0.40 +0.3 81,938 - DVUA0064 0.45 -0.1 81,970 - DVUA0064 0.47 +0.7 82,022 + DVUA0064 0.50 +0.3 82,045 - DVUA0064 0.51 +2.4 82,066 - DVUA0064 0.52 +0.1 82,202 - DVUA0064 0.60 -0.7 82,436 + DVUA0064 0.74 +1.4 82,438 - DVUA0064 0.74 -0.5 82,457 + DVUA0064 0.75 -0.5 82,473 + DVUA0064 0.76 -0.3 82,475 + DVUA0064 0.76 +1.4 82,499 + DVUA0064 0.78 +1.1 82,529 + DVUA0064 0.79 -0.2 82,529 + DVUA0064 0.79 +0.6 82,531 + DVUA0064 0.79 +0.8 82,531 + DVUA0064 0.79 -2.2 82,719 - +0.5 82,816 + +0.1 82,878 + +0.1 82,920 - -1.9 83,055 - -1.2 83,123 - DVUA0065 0.12 +0.1 83,272 - DVUA0065 0.19 +0.2 83,435 + DVUA0065 0.27 +0.1 83,443 - DVUA0065 0.28 -1.0 83,443 - DVUA0065 0.28 +0.5 83,471 + DVUA0065 0.29 -1.7 83,481 + DVUA0065 0.29 -0.1 83,639 - DVUA0065 0.37 -0.4 83,756 - DVUA0065 0.43 -0.9 83,793 + DVUA0065 0.45 -0.1 83,811 - DVUA0065 0.46 +0.0 83,836 - DVUA0065 0.47 -1.8 83,870 + DVUA0065 0.49 -0.0
Or see this region's nucleotide sequence