Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0398 and DVU0399 overlap by 4 nucleotides DVU0399 and DVU0400 are separated by 84 nucleotides DVU0400 and DVU0401 are separated by 17 nucleotides DVU0401 and dsrA are separated by 471 nucleotides
DVU0398: DVU0398 - HMGL-like domain protein (TIGR), at 445,885 to 447,711
DVU0398
DVU0399: DVU0399 - hypothetical protein (TIGR), at 447,708 to 448,496
DVU0399
DVU0400: DVU0400 - hypothetical protein (TIGR), at 448,581 to 449,132
DVU0400
DVU0401: DVU0401 - hypothetical protein (TIGR), at 449,150 to 449,416
DVU0401
DVU0402: dsrA - dissimilatory sulfite reductase alpha subunit (TIGR), at 449,888 to 451,201
dsrA
Position (kb) 448
449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 447.726 kb on + strand at 447.734 kb on - strand at 447.768 kb on - strand at 447.770 kb on + strand at 447.847 kb on + strand, within DVU0399 at 447.847 kb on + strand, within DVU0399 at 447.910 kb on + strand, within DVU0399 at 447.948 kb on + strand, within DVU0399 at 447.956 kb on - strand, within DVU0399 at 447.978 kb on + strand, within DVU0399 at 448.131 kb on + strand, within DVU0399 at 448.157 kb on - strand, within DVU0399 at 448.167 kb on - strand, within DVU0399 at 448.172 kb on - strand, within DVU0399 at 448.182 kb on - strand, within DVU0399 at 448.182 kb on - strand, within DVU0399 at 448.272 kb on - strand, within DVU0399 at 448.306 kb on + strand, within DVU0399 at 448.352 kb on + strand, within DVU0399 at 448.359 kb on + strand, within DVU0399 at 448.360 kb on - strand, within DVU0399 at 448.420 kb on + strand at 448.476 kb on - strand at 448.486 kb on - strand at 448.542 kb on + strand at 448.577 kb on - strand at 448.682 kb on + strand, within DVU0400 at 448.696 kb on + strand, within DVU0400 at 448.719 kb on - strand, within DVU0400 at 448.735 kb on + strand, within DVU0400 at 448.773 kb on + strand, within DVU0400 at 448.773 kb on + strand, within DVU0400 at 448.781 kb on - strand, within DVU0400 at 448.793 kb on + strand, within DVU0400 at 448.801 kb on - strand, within DVU0400 at 448.828 kb on + strand, within DVU0400 at 448.846 kb on - strand, within DVU0400 at 448.875 kb on - strand, within DVU0400 at 448.906 kb on - strand, within DVU0400 at 449.013 kb on + strand, within DVU0400 at 449.027 kb on - strand, within DVU0400 at 449.139 kb on + strand at 449.166 kb on + strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.198 kb on - strand, within DVU0401 at 449.212 kb on + strand, within DVU0401 at 449.324 kb on + strand, within DVU0401 at 449.361 kb on - strand, within DVU0401 at 449.385 kb on + strand, within DVU0401 at 449.393 kb on - strand at 449.465 kb on - strand at 449.484 kb on + strand at 449.494 kb on + strand at 449.513 kb on + strand at 449.513 kb on + strand at 449.513 kb on + strand at 449.519 kb on - strand at 449.526 kb on - strand at 449.561 kb on + strand at 449.654 kb on - strand at 449.685 kb on - strand at 449.770 kb on - strand at 449.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 447,726 + -0.1 447,734 - -0.2 447,768 - -0.9 447,770 + -0.2 447,847 + DVU0399 0.18 -0.1 447,847 + DVU0399 0.18 -0.5 447,910 + DVU0399 0.26 -2.7 447,948 + DVU0399 0.30 -2.5 447,956 - DVU0399 0.31 +0.2 447,978 + DVU0399 0.34 -0.3 448,131 + DVU0399 0.54 +0.1 448,157 - DVU0399 0.57 -0.6 448,167 - DVU0399 0.58 -1.2 448,172 - DVU0399 0.59 -0.8 448,182 - DVU0399 0.60 +0.2 448,182 - DVU0399 0.60 +0.4 448,272 - DVU0399 0.71 +0.8 448,306 + DVU0399 0.76 -3.3 448,352 + DVU0399 0.82 -2.8 448,359 + DVU0399 0.83 -0.6 448,360 - DVU0399 0.83 +0.7 448,420 + +0.1 448,476 - +1.6 448,486 - +0.5 448,542 + -0.3 448,577 - +0.1 448,682 + DVU0400 0.18 +0.1 448,696 + DVU0400 0.21 -0.1 448,719 - DVU0400 0.25 +0.7 448,735 + DVU0400 0.28 -0.3 448,773 + DVU0400 0.35 +0.4 448,773 + DVU0400 0.35 +0.7 448,781 - DVU0400 0.36 +0.2 448,793 + DVU0400 0.38 +0.4 448,801 - DVU0400 0.40 +0.1 448,828 + DVU0400 0.45 -1.2 448,846 - DVU0400 0.48 +0.2 448,875 - DVU0400 0.53 +0.1 448,906 - DVU0400 0.59 +1.1 449,013 + DVU0400 0.78 +0.1 449,027 - DVU0400 0.81 -0.1 449,139 + -1.0 449,166 + -0.5 449,174 - -3.1 449,174 - -0.1 449,198 - DVU0401 0.18 +0.7 449,212 + DVU0401 0.23 -1.4 449,324 + DVU0401 0.65 -0.0 449,361 - DVU0401 0.79 -0.6 449,385 + DVU0401 0.88 +1.2 449,393 - -1.3 449,465 - -0.6 449,484 + -0.4 449,494 + -3.3 449,513 + +0.1 449,513 + -1.0 449,513 + -0.1 449,519 - +0.8 449,526 - +0.0 449,561 + +0.2 449,654 - -0.1 449,685 - -1.9 449,770 - -0.4 449,864 - -0.9
Or see this region's nucleotide sequence