Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0346

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0344 and DVU0346 are separated by 346 nucleotidesDVU0346 and DVU0347 are separated by 295 nucleotidesDVU0347 and DVU0348 are separated by 18 nucleotides DVU0344: DVU0344 - methyl-accepting chemotaxis protein (TIGR), at 389,669 to 391,483 DVU0344 DVU0346: DVU0346 - membrane protein, putative (TIGR), at 391,830 to 393,368 DVU0346 DVU0347: DVU0347 - transferase, hexapeptide repeat family (TIGR), at 393,664 to 394,335 DVU0347 DVU0348: DVU0348 - hypothetical protein (TIGR), at 394,354 to 396,078 DVU0348 Position (kb) 391 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 390.847 kb on + strand, within DVU0344at 390.992 kb on - strand, within DVU0344at 391.093 kb on - strand, within DVU0344at 391.120 kb on - strand, within DVU0344at 391.264 kb on - strand, within DVU0344at 391.274 kb on + strand, within DVU0344at 391.291 kb on + strand, within DVU0344at 391.294 kb on - strand, within DVU0344at 391.301 kb on - strand, within DVU0344at 391.301 kb on - strand, within DVU0344at 391.339 kb on + strandat 391.382 kb on + strandat 391.415 kb on + strandat 391.442 kb on - strandat 391.462 kb on + strandat 391.520 kb on + strandat 391.632 kb on + strandat 391.632 kb on + strandat 391.632 kb on + strandat 391.640 kb on - strandat 391.640 kb on - strandat 391.640 kb on - strandat 391.640 kb on - strandat 391.640 kb on - strandat 391.645 kb on + strandat 391.678 kb on + strandat 391.678 kb on + strandat 391.716 kb on - strandat 391.726 kb on - strandat 391.726 kb on - strandat 391.773 kb on + strandat 391.791 kb on - strandat 391.793 kb on - strandat 391.854 kb on - strandat 393.374 kb on + strandat 393.409 kb on - strandat 393.416 kb on + strandat 393.481 kb on + strandat 393.559 kb on - strandat 393.566 kb on + strandat 393.566 kb on + strandat 393.574 kb on - strandat 393.574 kb on - strandat 393.592 kb on + strandat 393.592 kb on + strandat 393.600 kb on - strandat 393.600 kb on - strandat 393.600 kb on - strandat 393.696 kb on - strandat 393.779 kb on - strand, within DVU0347at 393.789 kb on - strand, within DVU0347at 393.792 kb on - strand, within DVU0347at 393.809 kb on - strand, within DVU0347at 393.859 kb on + strand, within DVU0347at 393.867 kb on - strand, within DVU0347at 393.876 kb on - strand, within DVU0347at 394.039 kb on - strand, within DVU0347at 394.118 kb on - strand, within DVU0347at 394.209 kb on + strand, within DVU0347at 394.226 kb on - strand, within DVU0347at 394.281 kb on + strandat 394.309 kb on - strandat 394.319 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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390,847 + DVU0344 0.65 +0.2
390,992 - DVU0344 0.73 +0.5
391,093 - DVU0344 0.78 -0.2
391,120 - DVU0344 0.80 +0.1
391,264 - DVU0344 0.88 -0.3
391,274 + DVU0344 0.88 -0.6
391,291 + DVU0344 0.89 -2.9
391,294 - DVU0344 0.90 -1.9
391,301 - DVU0344 0.90 +0.1
391,301 - DVU0344 0.90 +0.2
391,339 + -2.4
391,382 + +1.0
391,415 + -0.9
391,442 - -1.3
391,462 + -0.1
391,520 + +0.9
391,632 + -0.2
391,632 + +0.9
391,632 + -0.8
391,640 - +1.7
391,640 - +0.6
391,640 - -1.1
391,640 - -0.4
391,640 - +1.2
391,645 + +0.5
391,678 + -0.1
391,678 + +0.3
391,716 - -0.8
391,726 - +0.8
391,726 - -0.6
391,773 + -0.6
391,791 - +0.1
391,793 - -1.7
391,854 - +0.2
393,374 + -0.0
393,409 - +0.2
393,416 + +1.4
393,481 + -0.3
393,559 - +0.6
393,566 + +0.7
393,566 + -1.2
393,574 - +0.9
393,574 - +0.3
393,592 + -1.7
393,592 + -1.1
393,600 - +0.4
393,600 - +3.0
393,600 - -0.3
393,696 - -0.0
393,779 - DVU0347 0.17 -0.9
393,789 - DVU0347 0.19 -2.7
393,792 - DVU0347 0.19 +2.3
393,809 - DVU0347 0.22 -0.9
393,859 + DVU0347 0.29 -1.1
393,867 - DVU0347 0.30 -0.5
393,876 - DVU0347 0.32 -0.6
394,039 - DVU0347 0.56 +0.6
394,118 - DVU0347 0.68 -0.4
394,209 + DVU0347 0.81 -1.0
394,226 - DVU0347 0.84 -0.0
394,281 + -0.0
394,309 - +0.5
394,319 - -1.0

Or see this region's nucleotide sequence