Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0151 and ppsA are separated by 69 nucleotides ppsA and tRNA-Leu are separated by 178 nucleotides tRNA-Leu and DVU0153 are separated by 191 nucleotides
DVU0151: DVU0151 - HAMP domain/sigma-54 interaction domain protein (TIGR), at 184,043 to 186,916
DVU0151
DVU0152: ppsA - phosphoenolpyruvate synthase-related protein (TIGR), at 186,986 to 189,547
ppsA
DVU_tRNA-Leu-1: tRNA-Leu - tRNA with anticodon TAA for Leu (VIMSS-AUTO), at 189,726 to 189,812
tRNA-Leu
DVU0153: DVU0153 - hypothetical protein (TIGR), at 190,004 to 190,387
DVU0153
Position (kb) 186
187
188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 185.991 kb on - strand, within DVU0151 at 186.119 kb on + strand, within DVU0151 at 186.121 kb on + strand, within DVU0151 at 186.141 kb on + strand, within DVU0151 at 186.141 kb on + strand, within DVU0151 at 186.141 kb on + strand, within DVU0151 at 186.149 kb on - strand, within DVU0151 at 186.176 kb on + strand, within DVU0151 at 186.271 kb on - strand, within DVU0151 at 186.296 kb on - strand, within DVU0151 at 186.384 kb on + strand, within DVU0151 at 186.384 kb on + strand, within DVU0151 at 186.384 kb on + strand, within DVU0151 at 186.389 kb on + strand, within DVU0151 at 186.389 kb on + strand, within DVU0151 at 186.389 kb on + strand, within DVU0151 at 186.394 kb on + strand, within DVU0151 at 186.397 kb on - strand, within DVU0151 at 186.397 kb on - strand, within DVU0151 at 186.403 kb on + strand, within DVU0151 at 186.419 kb on + strand, within DVU0151 at 186.608 kb on - strand, within DVU0151 at 186.754 kb on + strand at 186.795 kb on - strand at 186.843 kb on + strand at 186.886 kb on - strand at 186.945 kb on - strand at 187.039 kb on - strand at 187.039 kb on - strand at 187.107 kb on - strand at 187.107 kb on - strand at 187.107 kb on - strand at 187.107 kb on - strand at 187.136 kb on + strand at 187.136 kb on + strand at 187.172 kb on + strand at 187.204 kb on + strand at 187.277 kb on + strand, within ppsA at 187.376 kb on + strand, within ppsA at 187.582 kb on + strand, within ppsA at 187.687 kb on + strand, within ppsA at 187.693 kb on - strand, within ppsA at 187.732 kb on + strand, within ppsA at 187.735 kb on - strand, within ppsA at 187.740 kb on - strand, within ppsA at 187.740 kb on - strand, within ppsA at 187.740 kb on - strand, within ppsA at 187.742 kb on + strand, within ppsA at 187.750 kb on - strand, within ppsA at 187.787 kb on + strand, within ppsA at 187.787 kb on + strand, within ppsA at 187.873 kb on - strand, within ppsA at 187.883 kb on - strand, within ppsA at 187.934 kb on - strand, within ppsA at 187.996 kb on - strand, within ppsA at 188.024 kb on - strand, within ppsA at 188.071 kb on - strand, within ppsA at 188.071 kb on - strand, within ppsA at 188.098 kb on - strand, within ppsA at 188.111 kb on + strand, within ppsA at 188.118 kb on + strand, within ppsA at 188.118 kb on + strand, within ppsA at 188.118 kb on + strand, within ppsA at 188.196 kb on + strand, within ppsA at 188.204 kb on - strand, within ppsA at 188.225 kb on + strand, within ppsA at 188.242 kb on + strand, within ppsA at 188.242 kb on + strand, within ppsA at 188.329 kb on + strand, within ppsA at 188.337 kb on + strand, within ppsA at 188.337 kb on + strand, within ppsA at 188.337 kb on + strand, within ppsA at 188.345 kb on - strand, within ppsA at 188.350 kb on - strand, within ppsA at 188.369 kb on - strand, within ppsA at 188.373 kb on + strand, within ppsA at 188.385 kb on + strand, within ppsA at 188.393 kb on - strand, within ppsA at 188.485 kb on + strand, within ppsA at 188.486 kb on + strand, within ppsA at 188.526 kb on + strand, within ppsA at 188.615 kb on + strand, within ppsA at 188.620 kb on + strand, within ppsA at 188.662 kb on - strand, within ppsA at 188.667 kb on - strand, within ppsA at 188.770 kb on - strand, within ppsA at 188.779 kb on + strand, within ppsA at 188.806 kb on + strand, within ppsA at 188.806 kb on + strand, within ppsA at 188.806 kb on + strand, within ppsA at 188.829 kb on - strand, within ppsA at 188.937 kb on + strand, within ppsA at 188.989 kb on + strand, within ppsA at 189.012 kb on - strand, within ppsA at 189.017 kb on + strand, within ppsA at 189.031 kb on + strand, within ppsA at 189.039 kb on - strand, within ppsA at 189.048 kb on + strand, within ppsA at 189.056 kb on - strand, within ppsA at 189.225 kb on - strand, within ppsA at 189.251 kb on + strand, within ppsA at 189.328 kb on + strand at 189.344 kb on - strand at 189.379 kb on - strand at 189.392 kb on - strand at 189.394 kb on - strand at 189.462 kb on - strand at 189.668 kb on - strand at 189.669 kb on - strand at 189.842 kb on + strand at 189.842 kb on + strand at 189.884 kb on - strand at 189.889 kb on + strand at 189.897 kb on + strand at 189.931 kb on + strand at 189.938 kb on + strand at 189.946 kb on - strand at 189.946 kb on - strand at 189.951 kb on - strand at 189.956 kb on - strand at 190.000 kb on - strand at 190.062 kb on + strand, within DVU0153 at 190.091 kb on + strand, within DVU0153 at 190.091 kb on - strand, within DVU0153 at 190.093 kb on + strand, within DVU0153 at 190.098 kb on + strand, within DVU0153 at 190.123 kb on + strand, within DVU0153 at 190.129 kb on - strand, within DVU0153 at 190.158 kb on - strand, within DVU0153 at 190.172 kb on - strand, within DVU0153 at 190.176 kb on + strand, within DVU0153 at 190.176 kb on + strand, within DVU0153 at 190.181 kb on + strand, within DVU0153 at 190.184 kb on - strand, within DVU0153 at 190.189 kb on - strand, within DVU0153 at 190.189 kb on - strand, within DVU0153 at 190.189 kb on - strand, within DVU0153 at 190.235 kb on - strand, within DVU0153 at 190.247 kb on + strand, within DVU0153 at 190.255 kb on - strand, within DVU0153 at 190.256 kb on + strand, within DVU0153 at 190.270 kb on - strand, within DVU0153 at 190.270 kb on - strand, within DVU0153 at 190.290 kb on + strand, within DVU0153 at 190.306 kb on - strand, within DVU0153 at 190.330 kb on + strand, within DVU0153 at 190.373 kb on + strand at 190.501 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 185,991 - DVU0151 0.68 +0.1 186,119 + DVU0151 0.72 -2.3 186,121 + DVU0151 0.72 -0.0 186,141 + DVU0151 0.73 -0.3 186,141 + DVU0151 0.73 -0.2 186,141 + DVU0151 0.73 +0.1 186,149 - DVU0151 0.73 -1.0 186,176 + DVU0151 0.74 +0.1 186,271 - DVU0151 0.78 +0.5 186,296 - DVU0151 0.78 -0.7 186,384 + DVU0151 0.81 -1.1 186,384 + DVU0151 0.81 -0.4 186,384 + DVU0151 0.81 -0.1 186,389 + DVU0151 0.82 -1.7 186,389 + DVU0151 0.82 +0.6 186,389 + DVU0151 0.82 +0.2 186,394 + DVU0151 0.82 +0.1 186,397 - DVU0151 0.82 -0.7 186,397 - DVU0151 0.82 -1.1 186,403 + DVU0151 0.82 -1.0 186,419 + DVU0151 0.83 -2.5 186,608 - DVU0151 0.89 +1.4 186,754 + -1.3 186,795 - -0.6 186,843 + +0.4 186,886 - +0.5 186,945 - -0.1 187,039 - +0.0 187,039 - +2.1 187,107 - -0.4 187,107 - -0.5 187,107 - -0.7 187,107 - +0.3 187,136 + -0.8 187,136 + -1.0 187,172 + -0.2 187,204 + -3.3 187,277 + ppsA DVU0152 0.11 +0.3 187,376 + ppsA DVU0152 0.15 -0.7 187,582 + ppsA DVU0152 0.23 +0.3 187,687 + ppsA DVU0152 0.27 -1.2 187,693 - ppsA DVU0152 0.28 -0.5 187,732 + ppsA DVU0152 0.29 +0.1 187,735 - ppsA DVU0152 0.29 +0.1 187,740 - ppsA DVU0152 0.29 +0.2 187,740 - ppsA DVU0152 0.29 -2.7 187,740 - ppsA DVU0152 0.29 -0.1 187,742 + ppsA DVU0152 0.30 -2.1 187,750 - ppsA DVU0152 0.30 +0.2 187,787 + ppsA DVU0152 0.31 -2.6 187,787 + ppsA DVU0152 0.31 +0.2 187,873 - ppsA DVU0152 0.35 +0.2 187,883 - ppsA DVU0152 0.35 +0.5 187,934 - ppsA DVU0152 0.37 -0.1 187,996 - ppsA DVU0152 0.39 +0.1 188,024 - ppsA DVU0152 0.41 -1.5 188,071 - ppsA DVU0152 0.42 -2.2 188,071 - ppsA DVU0152 0.42 -0.4 188,098 - ppsA DVU0152 0.43 +0.1 188,111 + ppsA DVU0152 0.44 -0.6 188,118 + ppsA DVU0152 0.44 -3.2 188,118 + ppsA DVU0152 0.44 +0.1 188,118 + ppsA DVU0152 0.44 -0.0 188,196 + ppsA DVU0152 0.47 -0.9 188,204 - ppsA DVU0152 0.48 +0.2 188,225 + ppsA DVU0152 0.48 -0.2 188,242 + ppsA DVU0152 0.49 -0.1 188,242 + ppsA DVU0152 0.49 -0.4 188,329 + ppsA DVU0152 0.52 +0.7 188,337 + ppsA DVU0152 0.53 +0.5 188,337 + ppsA DVU0152 0.53 -0.1 188,337 + ppsA DVU0152 0.53 +0.1 188,345 - ppsA DVU0152 0.53 +0.3 188,350 - ppsA DVU0152 0.53 -1.1 188,369 - ppsA DVU0152 0.54 -1.7 188,373 + ppsA DVU0152 0.54 +0.1 188,385 + ppsA DVU0152 0.55 -3.0 188,393 - ppsA DVU0152 0.55 -0.0 188,485 + ppsA DVU0152 0.59 -1.0 188,486 + ppsA DVU0152 0.59 -0.4 188,526 + ppsA DVU0152 0.60 -3.3 188,615 + ppsA DVU0152 0.64 +0.2 188,620 + ppsA DVU0152 0.64 -0.9 188,662 - ppsA DVU0152 0.65 -1.1 188,667 - ppsA DVU0152 0.66 -0.5 188,770 - ppsA DVU0152 0.70 +0.1 188,779 + ppsA DVU0152 0.70 -0.1 188,806 + ppsA DVU0152 0.71 +0.1 188,806 + ppsA DVU0152 0.71 +0.2 188,806 + ppsA DVU0152 0.71 +0.3 188,829 - ppsA DVU0152 0.72 -0.0 188,937 + ppsA DVU0152 0.76 +0.2 188,989 + ppsA DVU0152 0.78 -3.1 189,012 - ppsA DVU0152 0.79 +0.2 189,017 + ppsA DVU0152 0.79 +0.0 189,031 + ppsA DVU0152 0.80 -1.1 189,039 - ppsA DVU0152 0.80 +0.3 189,048 + ppsA DVU0152 0.80 -0.1 189,056 - ppsA DVU0152 0.81 -1.0 189,225 - ppsA DVU0152 0.87 -0.1 189,251 + ppsA DVU0152 0.88 +0.1 189,328 + -0.7 189,344 - +0.2 189,379 - +1.0 189,392 - -0.6 189,394 - -0.1 189,462 - +0.2 189,668 - +0.3 189,669 - +0.7 189,842 + -1.1 189,842 + -0.1 189,884 - -2.3 189,889 + -0.6 189,897 + +0.1 189,931 + -0.3 189,938 + -0.1 189,946 - -0.5 189,946 - +0.2 189,951 - +0.1 189,956 - +0.2 190,000 - -0.9 190,062 + DVU0153 0.15 -0.2 190,091 + DVU0153 0.23 +0.2 190,091 - DVU0153 0.23 +0.3 190,093 + DVU0153 0.23 +0.1 190,098 + DVU0153 0.24 -1.2 190,123 + DVU0153 0.31 +0.2 190,129 - DVU0153 0.33 +0.2 190,158 - DVU0153 0.40 +0.3 190,172 - DVU0153 0.44 +0.2 190,176 + DVU0153 0.45 +0.3 190,176 + DVU0153 0.45 +1.4 190,181 + DVU0153 0.46 -0.2 190,184 - DVU0153 0.47 -0.3 190,189 - DVU0153 0.48 -0.1 190,189 - DVU0153 0.48 +0.4 190,189 - DVU0153 0.48 +1.7 190,235 - DVU0153 0.60 -1.3 190,247 + DVU0153 0.63 +0.1 190,255 - DVU0153 0.65 +0.9 190,256 + DVU0153 0.66 -0.2 190,270 - DVU0153 0.69 -0.2 190,270 - DVU0153 0.69 -0.6 190,290 + DVU0153 0.74 +0.3 190,306 - DVU0153 0.79 -0.3 190,330 + DVU0153 0.85 -0.9 190,373 + -0.4 190,501 + -0.6
Or see this region's nucleotide sequence