Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2156

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2153 and DVU2154 overlap by 11 nucleotidesDVU2154 and DVU2155 overlap by 1 nucleotidesDVU2155 and DVU2156 are separated by 80 nucleotidesDVU2156 and DVU2157 overlap by 1 nucleotides DVU2153: DVU2153 - tail fiber protein, putative (TIGR), at 2,252,215 to 2,256,255 DVU2153 DVU2154: DVU2154 - tail assembly protein, putative (TIGR), at 2,256,245 to 2,256,670 DVU2154 DVU2155: DVU2155 - hypothetical protein (TIGR), at 2,256,670 to 2,257,095 DVU2155 DVU2156: DVU2156 - hypothetical protein (TIGR), at 2,257,176 to 2,257,541 DVU2156 DVU2157: DVU2157 - tail tape meausure protein, putative (TIGR), at 2,257,541 to 2,260,462 DVU2157 Position (kb) 2257 2258Strain fitness (log2 ratio) -2 -1 0 1at 2256.211 kb on + strandat 2256.267 kb on + strandat 2256.277 kb on - strandat 2256.294 kb on + strand, within DVU2154at 2256.294 kb on + strand, within DVU2154at 2256.294 kb on + strand, within DVU2154at 2256.299 kb on + strand, within DVU2154at 2256.299 kb on + strand, within DVU2154at 2256.302 kb on - strand, within DVU2154at 2256.307 kb on - strand, within DVU2154at 2256.307 kb on - strand, within DVU2154at 2256.312 kb on - strand, within DVU2154at 2256.401 kb on - strand, within DVU2154at 2256.416 kb on - strand, within DVU2154at 2256.511 kb on - strand, within DVU2154at 2256.586 kb on + strand, within DVU2154at 2256.614 kb on + strand, within DVU2154at 2256.622 kb on - strand, within DVU2154at 2256.638 kb on + strandat 2256.645 kb on + strandat 2256.676 kb on - strandat 2256.727 kb on + strand, within DVU2155at 2256.733 kb on - strand, within DVU2155at 2256.775 kb on + strand, within DVU2155at 2256.813 kb on + strand, within DVU2155at 2256.832 kb on + strand, within DVU2155at 2256.843 kb on + strand, within DVU2155at 2256.862 kb on - strand, within DVU2155at 2256.876 kb on - strand, within DVU2155at 2256.876 kb on - strand, within DVU2155at 2256.925 kb on + strand, within DVU2155at 2256.925 kb on + strand, within DVU2155at 2256.933 kb on - strand, within DVU2155at 2256.933 kb on - strand, within DVU2155at 2257.037 kb on + strand, within DVU2155at 2257.110 kb on + strandat 2257.110 kb on - strandat 2257.112 kb on + strandat 2257.118 kb on - strandat 2257.165 kb on - strandat 2257.242 kb on - strand, within DVU2156at 2257.242 kb on - strand, within DVU2156at 2257.260 kb on - strand, within DVU2156at 2257.357 kb on + strand, within DVU2156at 2257.367 kb on + strand, within DVU2156at 2257.399 kb on + strand, within DVU2156at 2257.399 kb on + strand, within DVU2156at 2257.399 kb on + strand, within DVU2156at 2257.399 kb on + strand, within DVU2156at 2257.399 kb on + strand, within DVU2156at 2257.399 kb on + strand, within DVU2156at 2257.399 kb on + strand, within DVU2156at 2257.407 kb on - strand, within DVU2156at 2257.407 kb on - strand, within DVU2156at 2257.407 kb on - strand, within DVU2156at 2257.417 kb on + strand, within DVU2156at 2257.430 kb on + strand, within DVU2156at 2257.494 kb on - strand, within DVU2156at 2257.591 kb on - strandat 2257.659 kb on - strandat 2257.751 kb on - strandat 2257.808 kb on - strandat 2257.865 kb on - strand, within DVU2157at 2258.031 kb on + strand, within DVU2157at 2258.039 kb on - strand, within DVU2157at 2258.049 kb on - strand, within DVU2157at 2258.108 kb on - strand, within DVU2157at 2258.108 kb on - strand, within DVU2157at 2258.169 kb on + strand, within DVU2157at 2258.204 kb on - strand, within DVU2157

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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2,256,211 + -0.0
2,256,267 + -1.0
2,256,277 - -0.7
2,256,294 + DVU2154 0.12 +0.0
2,256,294 + DVU2154 0.12 +0.3
2,256,294 + DVU2154 0.12 +0.1
2,256,299 + DVU2154 0.13 -2.0
2,256,299 + DVU2154 0.13 +0.0
2,256,302 - DVU2154 0.13 -0.1
2,256,307 - DVU2154 0.15 +0.1
2,256,307 - DVU2154 0.15 -0.0
2,256,312 - DVU2154 0.16 +0.5
2,256,401 - DVU2154 0.37 +0.3
2,256,416 - DVU2154 0.40 +1.6
2,256,511 - DVU2154 0.62 -0.0
2,256,586 + DVU2154 0.80 +0.8
2,256,614 + DVU2154 0.87 -2.0
2,256,622 - DVU2154 0.88 +0.3
2,256,638 + -0.8
2,256,645 + -2.6
2,256,676 - -0.1
2,256,727 + DVU2155 0.13 -1.0
2,256,733 - DVU2155 0.15 -1.0
2,256,775 + DVU2155 0.25 -0.2
2,256,813 + DVU2155 0.34 -0.9
2,256,832 + DVU2155 0.38 -1.1
2,256,843 + DVU2155 0.41 -0.3
2,256,862 - DVU2155 0.45 -1.0
2,256,876 - DVU2155 0.48 +0.3
2,256,876 - DVU2155 0.48 +0.2
2,256,925 + DVU2155 0.60 +0.1
2,256,925 + DVU2155 0.60 -0.0
2,256,933 - DVU2155 0.62 -0.8
2,256,933 - DVU2155 0.62 +0.4
2,257,037 + DVU2155 0.86 +0.0
2,257,110 + -0.7
2,257,110 - -2.0
2,257,112 + -1.4
2,257,118 - +0.3
2,257,165 - -1.2
2,257,242 - DVU2156 0.18 +0.3
2,257,242 - DVU2156 0.18 +0.0
2,257,260 - DVU2156 0.23 -1.1
2,257,357 + DVU2156 0.49 -1.2
2,257,367 + DVU2156 0.52 -1.1
2,257,399 + DVU2156 0.61 -1.1
2,257,399 + DVU2156 0.61 -0.0
2,257,399 + DVU2156 0.61 -1.9
2,257,399 + DVU2156 0.61 -0.3
2,257,399 + DVU2156 0.61 +0.4
2,257,399 + DVU2156 0.61 -1.0
2,257,399 + DVU2156 0.61 +0.6
2,257,407 - DVU2156 0.63 -0.0
2,257,407 - DVU2156 0.63 -1.9
2,257,407 - DVU2156 0.63 +1.1
2,257,417 + DVU2156 0.66 +0.1
2,257,430 + DVU2156 0.69 +1.0
2,257,494 - DVU2156 0.87 -1.8
2,257,591 - -1.0
2,257,659 - -0.3
2,257,751 - -1.2
2,257,808 - -0.7
2,257,865 - DVU2157 0.11 -0.5
2,258,031 + DVU2157 0.17 -0.5
2,258,039 - DVU2157 0.17 -0.2
2,258,049 - DVU2157 0.17 +0.2
2,258,108 - DVU2157 0.19 -0.9
2,258,108 - DVU2157 0.19 +0.3
2,258,169 + DVU2157 0.21 -0.8
2,258,204 - DVU2157 0.23 -2.4

Or see this region's nucleotide sequence