Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1780 and DVU1781 are separated by 184 nucleotides DVU1781 and DVU1782 overlap by 8 nucleotides DVU1782 and DVU1783 overlap by 8 nucleotides DVU1783 and DVU1784 are separated by 171 nucleotides
DVU1780: DVU1780 - conserved hypothetical protein (TIGR), at 1,843,438 to 1,843,743
DVU1780
DVU1781: DVU1781 - conserved hypothetical protein (TIGR), at 1,843,928 to 1,844,593
DVU1781
DVU1782: DVU1782 - iron-sulfur cluster-binding protein (TIGR), at 1,844,586 to 1,846,013
DVU1782
DVU1783: DVU1783 - cysteine-rich domain protein (TIGR), at 1,846,006 to 1,846,758
DVU1783
DVU1784: DVU1784 - oxidoreductase, short-chain dehydrogenase/reductase family (TIGR), at 1,846,930 to 1,847,691
DVU1784
Position (kb)
1844
1845
1846
1847 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1843.605 kb on + strand, within DVU1780 at 1843.611 kb on + strand, within DVU1780 at 1843.693 kb on - strand, within DVU1780 at 1843.712 kb on - strand, within DVU1780 at 1843.714 kb on - strand at 1843.722 kb on - strand at 1843.722 kb on - strand at 1843.754 kb on + strand at 1843.799 kb on + strand at 1843.909 kb on + strand at 1843.971 kb on + strand at 1844.002 kb on + strand, within DVU1781 at 1844.011 kb on + strand, within DVU1781 at 1844.068 kb on + strand, within DVU1781 at 1844.079 kb on + strand, within DVU1781 at 1844.113 kb on - strand, within DVU1781 at 1844.168 kb on + strand, within DVU1781 at 1844.176 kb on - strand, within DVU1781 at 1844.201 kb on - strand, within DVU1781 at 1844.303 kb on - strand, within DVU1781 at 1844.319 kb on + strand, within DVU1781 at 1844.345 kb on + strand, within DVU1781 at 1844.388 kb on + strand, within DVU1781 at 1844.409 kb on + strand, within DVU1781 at 1844.444 kb on - strand, within DVU1781 at 1844.596 kb on - strand at 1844.596 kb on - strand at 1844.618 kb on + strand at 1844.664 kb on + strand at 1844.681 kb on + strand at 1844.681 kb on + strand at 1844.691 kb on + strand at 1844.759 kb on - strand, within DVU1782 at 1844.795 kb on - strand, within DVU1782 at 1844.841 kb on + strand, within DVU1782 at 1844.865 kb on + strand, within DVU1782 at 1844.891 kb on + strand, within DVU1782 at 1844.914 kb on + strand, within DVU1782 at 1845.044 kb on - strand, within DVU1782 at 1845.088 kb on + strand, within DVU1782 at 1845.098 kb on + strand, within DVU1782 at 1845.106 kb on - strand, within DVU1782 at 1845.300 kb on + strand, within DVU1782 at 1845.476 kb on - strand, within DVU1782 at 1845.558 kb on + strand, within DVU1782 at 1845.599 kb on + strand, within DVU1782 at 1845.692 kb on + strand, within DVU1782 at 1845.728 kb on - strand, within DVU1782 at 1845.736 kb on - strand, within DVU1782 at 1845.803 kb on + strand, within DVU1782 at 1845.822 kb on - strand, within DVU1782 at 1845.855 kb on - strand, within DVU1782 at 1845.860 kb on + strand, within DVU1782 at 1845.868 kb on - strand, within DVU1782 at 1845.929 kb on - strand at 1845.998 kb on - strand at 1846.033 kb on - strand at 1846.048 kb on + strand at 1846.048 kb on + strand at 1846.053 kb on + strand at 1846.243 kb on + strand, within DVU1783 at 1846.314 kb on + strand, within DVU1783 at 1846.355 kb on + strand, within DVU1783 at 1846.491 kb on - strand, within DVU1783 at 1846.528 kb on - strand, within DVU1783 at 1846.618 kb on - strand, within DVU1783 at 1846.633 kb on + strand, within DVU1783 at 1846.730 kb on + strand at 1846.738 kb on - strand at 1846.738 kb on - strand at 1846.768 kb on - strand at 1846.787 kb on + strand at 1846.886 kb on + strand at 1846.914 kb on + strand at 1846.929 kb on - strand at 1846.930 kb on + strand at 1846.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 1,843,605 + DVU1780 0.55 +0.1 1,843,611 + DVU1780 0.57 +0.3 1,843,693 - DVU1780 0.83 -0.7 1,843,712 - DVU1780 0.90 +0.5 1,843,714 - -0.6 1,843,722 - +0.2 1,843,722 - -0.3 1,843,754 + -0.0 1,843,799 + -3.3 1,843,909 + +0.2 1,843,971 + +0.2 1,844,002 + DVU1781 0.11 -0.5 1,844,011 + DVU1781 0.12 -0.1 1,844,068 + DVU1781 0.21 +0.2 1,844,079 + DVU1781 0.23 -0.7 1,844,113 - DVU1781 0.28 +0.3 1,844,168 + DVU1781 0.36 +0.2 1,844,176 - DVU1781 0.37 -0.2 1,844,201 - DVU1781 0.41 -0.2 1,844,303 - DVU1781 0.56 -0.9 1,844,319 + DVU1781 0.59 -3.0 1,844,345 + DVU1781 0.63 -1.1 1,844,388 + DVU1781 0.69 -1.2 1,844,409 + DVU1781 0.72 -0.8 1,844,444 - DVU1781 0.77 +0.6 1,844,596 - -0.9 1,844,596 - +0.4 1,844,618 + -0.1 1,844,664 + -0.8 1,844,681 + -0.8 1,844,681 + -0.6 1,844,691 + -0.5 1,844,759 - DVU1782 0.12 +0.1 1,844,795 - DVU1782 0.15 -0.8 1,844,841 + DVU1782 0.18 -0.7 1,844,865 + DVU1782 0.20 +0.8 1,844,891 + DVU1782 0.21 -0.1 1,844,914 + DVU1782 0.23 -3.0 1,845,044 - DVU1782 0.32 -1.3 1,845,088 + DVU1782 0.35 -1.6 1,845,098 + DVU1782 0.36 +0.1 1,845,106 - DVU1782 0.36 -2.8 1,845,300 + DVU1782 0.50 -0.7 1,845,476 - DVU1782 0.62 +0.6 1,845,558 + DVU1782 0.68 +0.1 1,845,599 + DVU1782 0.71 -1.1 1,845,692 + DVU1782 0.77 -0.5 1,845,728 - DVU1782 0.80 -1.2 1,845,736 - DVU1782 0.81 +0.1 1,845,803 + DVU1782 0.85 +0.5 1,845,822 - DVU1782 0.87 +0.1 1,845,855 - DVU1782 0.89 +0.2 1,845,860 + DVU1782 0.89 -1.2 1,845,868 - DVU1782 0.90 +0.3 1,845,929 - +0.6 1,845,998 - +0.0 1,846,033 - +0.1 1,846,048 + -3.0 1,846,048 + +0.3 1,846,053 + -1.0 1,846,243 + DVU1783 0.31 -1.0 1,846,314 + DVU1783 0.41 -1.1 1,846,355 + DVU1783 0.46 -1.0 1,846,491 - DVU1783 0.64 +0.8 1,846,528 - DVU1783 0.69 -2.9 1,846,618 - DVU1783 0.81 +0.2 1,846,633 + DVU1783 0.83 -1.4 1,846,730 + +0.1 1,846,738 - -0.4 1,846,738 - -1.3 1,846,768 - +0.7 1,846,787 + -1.0 1,846,886 + -0.3 1,846,914 + +0.2 1,846,929 - +0.5 1,846,930 + +0.0 1,846,938 - +1.0
Or see this region's nucleotide sequence