Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1705 and DVU1707 are separated by 49 nucleotides DVU1707 and DVU1708 are separated by 2 nucleotides DVU1708 and hsdM are separated by 2 nucleotides
DVU1705: DVU1705 - type I restriction-modification enzyme, S subunit (TIGR), at 1,781,460 to 1,782,710
DVU1705
DVU1707: DVU1707 - hypothetical protein (TIGR), at 1,782,760 to 1,782,969
DVU1707
DVU1708: DVU1708 - conserved hypothetical protein (TIGR), at 1,782,972 to 1,783,985
DVU1708
DVU1709: hsdM - type I restriction-modification system, M subunit (TIGR), at 1,783,988 to 1,785,508
hsdM
Position (kb)
1782
1783
1784 Strain fitness (log2 ratio)
-2
-1
0
1 at 1782.188 kb on - strand, within DVU1705 at 1782.472 kb on - strand, within DVU1705 at 1783.091 kb on - strand, within DVU1708 at 1783.170 kb on + strand, within DVU1708 at 1783.266 kb on - strand, within DVU1708 at 1783.296 kb on - strand, within DVU1708 at 1783.555 kb on + strand, within DVU1708 at 1783.665 kb on + strand, within DVU1708 at 1784.088 kb on - strand at 1784.218 kb on + strand, within hsdM at 1784.236 kb on - strand, within hsdM at 1784.373 kb on + strand, within hsdM at 1784.400 kb on + strand, within hsdM at 1784.479 kb on + strand, within hsdM at 1784.558 kb on - strand, within hsdM at 1784.692 kb on - strand, within hsdM at 1784.744 kb on + strand, within hsdM at 1784.753 kb on + strand, within hsdM at 1784.921 kb on - strand, within hsdM at 1784.935 kb on + strand, within hsdM
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 1,782,188 - DVU1705 0.58 -1.8 1,782,472 - DVU1705 0.81 +0.0 1,783,091 - DVU1708 0.12 -2.2 1,783,170 + DVU1708 0.20 +0.1 1,783,266 - DVU1708 0.29 -1.4 1,783,296 - DVU1708 0.32 -0.4 1,783,555 + DVU1708 0.57 +0.4 1,783,665 + DVU1708 0.68 -0.2 1,784,088 - +0.0 1,784,218 + hsdM DVU1709 0.15 -0.6 1,784,236 - hsdM DVU1709 0.16 +0.1 1,784,373 + hsdM DVU1709 0.25 -0.4 1,784,400 + hsdM DVU1709 0.27 -0.0 1,784,479 + hsdM DVU1709 0.32 -0.3 1,784,558 - hsdM DVU1709 0.37 -0.2 1,784,692 - hsdM DVU1709 0.46 +1.1 1,784,744 + hsdM DVU1709 0.50 -0.3 1,784,753 + hsdM DVU1709 0.50 +0.4 1,784,921 - hsdM DVU1709 0.61 -0.3 1,784,935 + hsdM DVU1709 0.62 -2.2
Or see this region's nucleotide sequence