Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF20226

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2763 and DORF20226 are separated by 98 nucleotidesDORF20226 and DVU2764 are separated by 109 nucleotidesDVU2764 and DVU2765 overlap by 1 nucleotides DVU2763: DVU2763 - TPR/GGDEF domain protein (TIGR), at 2,870,485 to 2,872,863 DVU2763 DORF20226: DORF20226 - no description, at 2,872,962 to 2,873,090 DORF20226 DVU2764: DVU2764 - nitroreductase family protein (TIGR), at 2,873,200 to 2,873,718 DVU2764 DVU2765: DVU2765 - metallo-beta-lactamase family protein (TIGR), at 2,873,718 to 2,874,344 DVU2765 Position (kb) 2872 2873 2874Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2871.983 kb on + strand, within DVU2763at 2871.994 kb on - strand, within DVU2763at 2872.046 kb on - strand, within DVU2763at 2872.067 kb on + strand, within DVU2763at 2872.096 kb on + strand, within DVU2763at 2872.096 kb on + strand, within DVU2763at 2872.129 kb on - strand, within DVU2763at 2872.177 kb on - strand, within DVU2763at 2872.177 kb on - strand, within DVU2763at 2872.316 kb on + strand, within DVU2763at 2872.345 kb on - strand, within DVU2763at 2872.392 kb on + strand, within DVU2763at 2872.394 kb on - strand, within DVU2763at 2872.400 kb on - strand, within DVU2763at 2872.408 kb on + strand, within DVU2763at 2872.416 kb on - strand, within DVU2763at 2872.416 kb on - strand, within DVU2763at 2872.516 kb on - strand, within DVU2763at 2872.544 kb on + strand, within DVU2763at 2872.544 kb on + strand, within DVU2763at 2872.544 kb on + strand, within DVU2763at 2872.552 kb on - strand, within DVU2763at 2872.552 kb on - strand, within DVU2763at 2872.748 kb on + strandat 2872.756 kb on - strandat 2872.848 kb on + strandat 2872.848 kb on - strandat 2872.848 kb on - strandat 2872.878 kb on + strandat 2872.881 kb on - strandat 2872.958 kb on + strandat 2872.958 kb on + strandat 2872.958 kb on + strandat 2872.958 kb on + strandat 2872.958 kb on + strandat 2872.958 kb on + strandat 2872.966 kb on - strandat 2872.966 kb on - strandat 2872.966 kb on - strandat 2872.966 kb on - strandat 2872.966 kb on - strandat 2872.967 kb on - strandat 2872.977 kb on - strand, within DORF20226at 2872.983 kb on + strand, within DORF20226at 2872.983 kb on + strand, within DORF20226at 2872.991 kb on - strand, within DORF20226at 2873.006 kb on + strand, within DORF20226at 2873.048 kb on + strand, within DORF20226at 2873.182 kb on + strandat 2873.206 kb on - strandat 2873.215 kb on + strandat 2873.215 kb on + strandat 2873.241 kb on + strandat 2873.253 kb on + strand, within DVU2764at 2873.261 kb on - strand, within DVU2764at 2873.261 kb on - strand, within DVU2764at 2873.261 kb on - strand, within DVU2764at 2873.261 kb on - strand, within DVU2764at 2873.292 kb on + strand, within DVU2764at 2873.342 kb on - strand, within DVU2764at 2873.582 kb on + strand, within DVU2764at 2873.695 kb on - strandat 2873.848 kb on + strand, within DVU2765at 2873.855 kb on - strand, within DVU2765at 2873.862 kb on - strand, within DVU2765at 2873.884 kb on + strand, within DVU2765at 2873.885 kb on - strand, within DVU2765at 2873.887 kb on - strand, within DVU2765at 2873.895 kb on + strand, within DVU2765at 2873.905 kb on + strand, within DVU2765at 2873.932 kb on + strand, within DVU2765at 2873.989 kb on - strand, within DVU2765at 2873.996 kb on - strand, within DVU2765at 2874.045 kb on + strand, within DVU2765at 2874.078 kb on + strand, within DVU2765at 2874.090 kb on + strand, within DVU2765

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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2,871,983 + DVU2763 0.63 -3.8
2,871,994 - DVU2763 0.63 -1.7
2,872,046 - DVU2763 0.66 -1.3
2,872,067 + DVU2763 0.66 -1.9
2,872,096 + DVU2763 0.68 -4.1
2,872,096 + DVU2763 0.68 -2.0
2,872,129 - DVU2763 0.69 -2.2
2,872,177 - DVU2763 0.71 -2.5
2,872,177 - DVU2763 0.71 -1.7
2,872,316 + DVU2763 0.77 -3.3
2,872,345 - DVU2763 0.78 -2.3
2,872,392 + DVU2763 0.80 -0.0
2,872,394 - DVU2763 0.80 -1.1
2,872,400 - DVU2763 0.80 -2.5
2,872,408 + DVU2763 0.81 -1.9
2,872,416 - DVU2763 0.81 -1.3
2,872,416 - DVU2763 0.81 -2.0
2,872,516 - DVU2763 0.85 -1.4
2,872,544 + DVU2763 0.87 -2.4
2,872,544 + DVU2763 0.87 -1.2
2,872,544 + DVU2763 0.87 -0.6
2,872,552 - DVU2763 0.87 -2.0
2,872,552 - DVU2763 0.87 -2.6
2,872,748 + -2.9
2,872,756 - -1.6
2,872,848 + -1.7
2,872,848 - -0.5
2,872,848 - -2.7
2,872,878 + -1.7
2,872,881 - -0.5
2,872,958 + -0.7
2,872,958 + -0.2
2,872,958 + -0.9
2,872,958 + +0.1
2,872,958 + -0.7
2,872,958 + +0.1
2,872,966 - -0.3
2,872,966 - -0.6
2,872,966 - -0.9
2,872,966 - +0.3
2,872,966 - +0.2
2,872,967 - -1.5
2,872,977 - DORF20226 0.12 -1.2
2,872,983 + DORF20226 0.16 -0.7
2,872,983 + DORF20226 0.16 -1.2
2,872,991 - DORF20226 0.22 -0.3
2,873,006 + DORF20226 0.34 -0.8
2,873,048 + DORF20226 0.67 +0.5
2,873,182 + +1.2
2,873,206 - -0.1
2,873,215 + +0.0
2,873,215 + +0.3
2,873,241 + -0.6
2,873,253 + DVU2764 0.10 +0.4
2,873,261 - DVU2764 0.12 -0.7
2,873,261 - DVU2764 0.12 -3.3
2,873,261 - DVU2764 0.12 +0.3
2,873,261 - DVU2764 0.12 +0.5
2,873,292 + DVU2764 0.18 +0.1
2,873,342 - DVU2764 0.27 +0.4
2,873,582 + DVU2764 0.74 -1.3
2,873,695 - +1.4
2,873,848 + DVU2765 0.21 -1.7
2,873,855 - DVU2765 0.22 -2.0
2,873,862 - DVU2765 0.23 -0.7
2,873,884 + DVU2765 0.26 -0.8
2,873,885 - DVU2765 0.27 +0.2
2,873,887 - DVU2765 0.27 -0.5
2,873,895 + DVU2765 0.28 +0.4
2,873,905 + DVU2765 0.30 +0.5
2,873,932 + DVU2765 0.34 -1.3
2,873,989 - DVU2765 0.43 -0.8
2,873,996 - DVU2765 0.44 -0.6
2,874,045 + DVU2765 0.52 +0.1
2,874,078 + DVU2765 0.57 -0.2
2,874,090 + DVU2765 0.59 +1.0

Or see this region's nucleotide sequence