Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0036 and DVUA0037 are separated by 203 nucleotides DVUA0037 and b0983 overlap by 1 nucleotides b0983 and DVUA0039 are separated by 0 nucleotides
DVUA0036: DVUA0036 - TPR domain protein (TIGR), at 41,239 to 43,986
DVUA0036
DVUA0037: DVUA0037 - sugar transferase domain protein (TIGR), at 44,190 to 45,644
DVUA0037
DVUA0038: b0983 - capsular polysaccharide transport protein (TIGR), at 45,644 to 46,450
b0983
DVUA0039: DVUA0039 - chain length determinant family protein (TIGR), at 46,451 to 47,953
DVUA0039
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 43.418 kb on + strand, within DVUA0036 at 43.473 kb on - strand, within DVUA0036 at 43.473 kb on - strand, within DVUA0036 at 43.477 kb on + strand, within DVUA0036 at 43.499 kb on + strand, within DVUA0036 at 43.507 kb on - strand, within DVUA0036 at 43.526 kb on - strand, within DVUA0036 at 43.544 kb on - strand, within DVUA0036 at 43.554 kb on - strand, within DVUA0036 at 43.567 kb on + strand, within DVUA0036 at 43.638 kb on - strand, within DVUA0036 at 43.729 kb on + strand at 43.737 kb on - strand at 43.737 kb on - strand at 43.737 kb on - strand at 43.754 kb on + strand at 43.772 kb on - strand at 43.805 kb on + strand at 43.880 kb on - strand at 43.880 kb on - strand at 43.880 kb on - strand at 43.880 kb on - strand at 43.903 kb on + strand at 43.926 kb on - strand at 44.003 kb on - strand at 44.039 kb on - strand at 44.159 kb on - strand at 44.172 kb on - strand at 44.314 kb on - strand at 44.351 kb on + strand, within DVUA0037 at 44.428 kb on + strand, within DVUA0037 at 44.519 kb on + strand, within DVUA0037 at 44.571 kb on + strand, within DVUA0037 at 44.571 kb on + strand, within DVUA0037 at 44.582 kb on + strand, within DVUA0037 at 44.616 kb on - strand, within DVUA0037 at 44.650 kb on - strand, within DVUA0037 at 44.673 kb on + strand, within DVUA0037 at 44.673 kb on + strand, within DVUA0037 at 44.676 kb on - strand, within DVUA0037 at 44.707 kb on + strand, within DVUA0037 at 44.715 kb on - strand, within DVUA0037 at 44.849 kb on + strand, within DVUA0037 at 44.865 kb on + strand, within DVUA0037 at 44.872 kb on + strand, within DVUA0037 at 44.882 kb on - strand, within DVUA0037 at 44.895 kb on + strand, within DVUA0037 at 44.944 kb on + strand, within DVUA0037 at 44.946 kb on + strand, within DVUA0037 at 44.978 kb on - strand, within DVUA0037 at 45.012 kb on + strand, within DVUA0037 at 45.133 kb on - strand, within DVUA0037 at 45.169 kb on + strand, within DVUA0037 at 45.177 kb on - strand, within DVUA0037 at 45.221 kb on - strand, within DVUA0037 at 45.222 kb on - strand, within DVUA0037 at 45.232 kb on - strand, within DVUA0037 at 45.238 kb on - strand, within DVUA0037 at 45.265 kb on - strand, within DVUA0037 at 45.423 kb on + strand, within DVUA0037 at 45.704 kb on - strand at 45.804 kb on + strand, within b0983 at 45.812 kb on - strand, within b0983 at 45.842 kb on + strand, within b0983 at 45.842 kb on + strand, within b0983 at 45.850 kb on - strand, within b0983 at 45.859 kb on + strand, within b0983 at 45.860 kb on + strand, within b0983 at 45.901 kb on - strand, within b0983 at 45.960 kb on + strand, within b0983 at 46.093 kb on - strand, within b0983 at 46.227 kb on + strand, within b0983 at 46.234 kb on - strand, within b0983 at 46.243 kb on + strand, within b0983 at 46.245 kb on + strand, within b0983 at 46.250 kb on + strand, within b0983 at 46.267 kb on + strand, within b0983 at 46.280 kb on + strand, within b0983 at 46.345 kb on + strand, within b0983 at 46.574 kb on - strand at 46.577 kb on + strand at 46.587 kb on + strand at 46.632 kb on + strand, within DVUA0039
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 43,418 + DVUA0036 0.79 -0.0 43,473 - DVUA0036 0.81 -0.6 43,473 - DVUA0036 0.81 -2.3 43,477 + DVUA0036 0.81 -0.1 43,499 + DVUA0036 0.82 -1.2 43,507 - DVUA0036 0.83 +0.5 43,526 - DVUA0036 0.83 -1.3 43,544 - DVUA0036 0.84 +1.4 43,554 - DVUA0036 0.84 -0.9 43,567 + DVUA0036 0.85 -0.9 43,638 - DVUA0036 0.87 -0.3 43,729 + -0.3 43,737 - +0.2 43,737 - -1.0 43,737 - -0.5 43,754 + +0.1 43,772 - +1.5 43,805 + +1.3 43,880 - +0.1 43,880 - -0.8 43,880 - -2.9 43,880 - -0.1 43,903 + -0.9 43,926 - +0.7 44,003 - +0.1 44,039 - +0.1 44,159 - +0.7 44,172 - +0.1 44,314 - +0.3 44,351 + DVUA0037 0.11 +0.7 44,428 + DVUA0037 0.16 -0.8 44,519 + DVUA0037 0.23 -0.2 44,571 + DVUA0037 0.26 -0.5 44,571 + DVUA0037 0.26 -1.6 44,582 + DVUA0037 0.27 +0.2 44,616 - DVUA0037 0.29 +0.2 44,650 - DVUA0037 0.32 -0.4 44,673 + DVUA0037 0.33 +0.3 44,673 + DVUA0037 0.33 -0.6 44,676 - DVUA0037 0.33 -0.3 44,707 + DVUA0037 0.36 -1.9 44,715 - DVUA0037 0.36 +0.5 44,849 + DVUA0037 0.45 -0.5 44,865 + DVUA0037 0.46 -0.1 44,872 + DVUA0037 0.47 -2.0 44,882 - DVUA0037 0.48 -1.8 44,895 + DVUA0037 0.48 -1.6 44,944 + DVUA0037 0.52 -0.7 44,946 + DVUA0037 0.52 -0.2 44,978 - DVUA0037 0.54 +0.4 45,012 + DVUA0037 0.56 -0.2 45,133 - DVUA0037 0.65 +0.1 45,169 + DVUA0037 0.67 -0.2 45,177 - DVUA0037 0.68 +1.6 45,221 - DVUA0037 0.71 +0.6 45,222 - DVUA0037 0.71 -0.2 45,232 - DVUA0037 0.72 -0.9 45,238 - DVUA0037 0.72 -1.1 45,265 - DVUA0037 0.74 +0.1 45,423 + DVUA0037 0.85 +0.4 45,704 - -0.2 45,804 + b0983 DVUA0038 0.20 -1.0 45,812 - b0983 DVUA0038 0.21 +1.1 45,842 + b0983 DVUA0038 0.25 -0.1 45,842 + b0983 DVUA0038 0.25 +0.6 45,850 - b0983 DVUA0038 0.26 -2.4 45,859 + b0983 DVUA0038 0.27 -0.2 45,860 + b0983 DVUA0038 0.27 -0.3 45,901 - b0983 DVUA0038 0.32 +0.3 45,960 + b0983 DVUA0038 0.39 +0.1 46,093 - b0983 DVUA0038 0.56 -0.0 46,227 + b0983 DVUA0038 0.72 -0.3 46,234 - b0983 DVUA0038 0.73 -0.0 46,243 + b0983 DVUA0038 0.74 -1.8 46,245 + b0983 DVUA0038 0.74 -1.5 46,250 + b0983 DVUA0038 0.75 -0.1 46,267 + b0983 DVUA0038 0.77 +0.3 46,280 + b0983 DVUA0038 0.79 -0.7 46,345 + b0983 DVUA0038 0.87 -0.1 46,574 - -0.4 46,577 + -0.5 46,587 + -0.6 46,632 + DVUA0039 0.12 -1.1
Or see this region's nucleotide sequence