Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0443

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0442 and DVU0443 are separated by 212 nucleotidesDVU0443 and DVU0444 are separated by 7 nucleotides DVU0442: DVU0442 - phoH-related protein (TIGR), at 499,787 to 500,983 DVU0442 DVU0443: DVU0443 - exonuclease, putative (Keith Keller), at 501,196 to 501,930 DVU0443 DVU0444: DVU0444 - CBS domain protein (TIGR), at 501,938 to 504,160 DVU0444 Position (kb) 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1at 500.199 kb on + strand, within DVU0442at 500.207 kb on - strand, within DVU0442at 500.348 kb on + strand, within DVU0442at 500.349 kb on + strand, within DVU0442at 500.356 kb on - strand, within DVU0442at 500.372 kb on - strand, within DVU0442at 500.382 kb on - strand, within DVU0442at 500.428 kb on + strand, within DVU0442at 500.428 kb on + strand, within DVU0442at 500.431 kb on - strand, within DVU0442at 500.534 kb on + strand, within DVU0442at 500.615 kb on - strand, within DVU0442at 500.633 kb on - strand, within DVU0442at 500.732 kb on + strand, within DVU0442at 500.816 kb on - strand, within DVU0442at 500.818 kb on + strand, within DVU0442at 500.826 kb on - strand, within DVU0442at 500.947 kb on + strandat 501.075 kb on - strandat 501.090 kb on + strandat 501.210 kb on - strandat 501.218 kb on + strandat 501.242 kb on - strandat 501.258 kb on - strandat 501.386 kb on + strand, within DVU0443at 501.394 kb on - strand, within DVU0443at 501.394 kb on - strand, within DVU0443at 501.454 kb on - strand, within DVU0443at 501.474 kb on - strand, within DVU0443at 501.476 kb on - strand, within DVU0443at 501.598 kb on + strand, within DVU0443at 501.774 kb on + strand, within DVU0443at 501.797 kb on - strand, within DVU0443at 501.855 kb on + strand, within DVU0443at 501.863 kb on - strandat 501.925 kb on + strandat 501.945 kb on + strandat 501.953 kb on + strandat 501.953 kb on + strandat 501.960 kb on - strandat 501.966 kb on - strandat 502.002 kb on + strandat 502.002 kb on + strandat 502.049 kb on - strandat 502.054 kb on - strandat 502.059 kb on + strandat 502.081 kb on - strandat 502.132 kb on - strandat 502.174 kb on + strand, within DVU0444at 502.174 kb on + strand, within DVU0444at 502.179 kb on + strand, within DVU0444at 502.182 kb on - strand, within DVU0444at 502.182 kb on - strand, within DVU0444at 502.185 kb on + strand, within DVU0444at 502.187 kb on - strand, within DVU0444at 502.216 kb on + strand, within DVU0444at 502.277 kb on - strand, within DVU0444at 502.284 kb on - strand, within DVU0444at 502.295 kb on + strand, within DVU0444at 502.303 kb on - strand, within DVU0444at 502.320 kb on + strand, within DVU0444at 502.323 kb on - strand, within DVU0444at 502.325 kb on + strand, within DVU0444at 502.356 kb on + strand, within DVU0444at 502.423 kb on + strand, within DVU0444at 502.425 kb on + strand, within DVU0444at 502.431 kb on - strand, within DVU0444at 502.431 kb on - strand, within DVU0444at 502.446 kb on + strand, within DVU0444at 502.471 kb on + strand, within DVU0444at 502.471 kb on + strand, within DVU0444at 502.471 kb on + strand, within DVU0444at 502.471 kb on + strand, within DVU0444at 502.471 kb on + strand, within DVU0444at 502.479 kb on - strand, within DVU0444at 502.479 kb on - strand, within DVU0444at 502.572 kb on - strand, within DVU0444at 502.572 kb on - strand, within DVU0444at 502.616 kb on + strand, within DVU0444at 502.640 kb on + strand, within DVU0444at 502.665 kb on + strand, within DVU0444at 502.691 kb on + strand, within DVU0444at 502.699 kb on - strand, within DVU0444at 502.842 kb on + strand, within DVU0444at 502.858 kb on - strand, within DVU0444at 502.862 kb on + strand, within DVU0444at 502.927 kb on - strand, within DVU0444

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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500,199 + DVU0442 0.34 -0.6
500,207 - DVU0442 0.35 -0.8
500,348 + DVU0442 0.47 -1.1
500,349 + DVU0442 0.47 +0.1
500,356 - DVU0442 0.48 -2.0
500,372 - DVU0442 0.49 -0.1
500,382 - DVU0442 0.50 -0.1
500,428 + DVU0442 0.54 -3.3
500,428 + DVU0442 0.54 -0.4
500,431 - DVU0442 0.54 +1.2
500,534 + DVU0442 0.62 +0.8
500,615 - DVU0442 0.69 +1.1
500,633 - DVU0442 0.71 -1.0
500,732 + DVU0442 0.79 +0.1
500,816 - DVU0442 0.86 -2.0
500,818 + DVU0442 0.86 -0.7
500,826 - DVU0442 0.87 -0.1
500,947 + -0.5
501,075 - -0.2
501,090 + +1.3
501,210 - -0.2
501,218 + -0.1
501,242 - +0.1
501,258 - -1.5
501,386 + DVU0443 0.26 +0.5
501,394 - DVU0443 0.27 +0.4
501,394 - DVU0443 0.27 +0.1
501,454 - DVU0443 0.35 +0.0
501,474 - DVU0443 0.38 +0.5
501,476 - DVU0443 0.38 +0.4
501,598 + DVU0443 0.55 -0.7
501,774 + DVU0443 0.79 -0.9
501,797 - DVU0443 0.82 -0.2
501,855 + DVU0443 0.90 +0.8
501,863 - -1.4
501,925 + -0.4
501,945 + +1.3
501,953 + +0.2
501,953 + -0.2
501,960 - -1.3
501,966 - -0.1
502,002 + -1.3
502,002 + -1.2
502,049 - -0.1
502,054 - -1.0
502,059 + +0.2
502,081 - -0.2
502,132 - +0.3
502,174 + DVU0444 0.11 +0.3
502,174 + DVU0444 0.11 -0.7
502,179 + DVU0444 0.11 -0.6
502,182 - DVU0444 0.11 -1.4
502,182 - DVU0444 0.11 +0.1
502,185 + DVU0444 0.11 +0.1
502,187 - DVU0444 0.11 -0.2
502,216 + DVU0444 0.13 +0.1
502,277 - DVU0444 0.15 +0.7
502,284 - DVU0444 0.16 -1.4
502,295 + DVU0444 0.16 -0.2
502,303 - DVU0444 0.16 -1.8
502,320 + DVU0444 0.17 -0.0
502,323 - DVU0444 0.17 -0.6
502,325 + DVU0444 0.17 -0.6
502,356 + DVU0444 0.19 -0.2
502,423 + DVU0444 0.22 +0.3
502,425 + DVU0444 0.22 +0.6
502,431 - DVU0444 0.22 -0.3
502,431 - DVU0444 0.22 -0.2
502,446 + DVU0444 0.23 -0.5
502,471 + DVU0444 0.24 -1.8
502,471 + DVU0444 0.24 +0.3
502,471 + DVU0444 0.24 -2.8
502,471 + DVU0444 0.24 +0.1
502,471 + DVU0444 0.24 -0.3
502,479 - DVU0444 0.24 -1.0
502,479 - DVU0444 0.24 -0.2
502,572 - DVU0444 0.29 -0.1
502,572 - DVU0444 0.29 -0.0
502,616 + DVU0444 0.30 +0.1
502,640 + DVU0444 0.32 -2.2
502,665 + DVU0444 0.33 +0.1
502,691 + DVU0444 0.34 +0.3
502,699 - DVU0444 0.34 -0.2
502,842 + DVU0444 0.41 +1.5
502,858 - DVU0444 0.41 -0.2
502,862 + DVU0444 0.42 +0.0
502,927 - DVU0444 0.44 -1.2

Or see this region's nucleotide sequence