Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0296

Experiment: MoYLS4 with DMSO 10%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0295 and DVU0296 are separated by 98 nucleotidesDVU0296 and DVU0297 are separated by 640 nucleotides DVU0295: DVU0295 - amine oxidase, flavin-containing (TIGR), at 340,483 to 341,832 DVU0295 DVU0296: DVU0296 - peptidase, M24 family (TIGR), at 341,931 to 343,001 DVU0296 DVU0297: DVU0297 - hypothetical protein (TIGR), at 343,642 to 343,836 DVU0297 Position (kb) 341 342 343 344Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 340.994 kb on + strand, within DVU0295at 340.996 kb on - strand, within DVU0295at 341.067 kb on + strand, within DVU0295at 341.074 kb on + strand, within DVU0295at 341.132 kb on + strand, within DVU0295at 341.156 kb on + strand, within DVU0295at 341.161 kb on + strand, within DVU0295at 341.164 kb on - strand, within DVU0295at 341.184 kb on + strand, within DVU0295at 341.192 kb on - strand, within DVU0295at 341.192 kb on - strand, within DVU0295at 341.223 kb on - strand, within DVU0295at 341.228 kb on + strand, within DVU0295at 341.236 kb on - strand, within DVU0295at 341.236 kb on - strand, within DVU0295at 341.240 kb on + strand, within DVU0295at 341.248 kb on - strand, within DVU0295at 341.282 kb on - strand, within DVU0295at 341.344 kb on + strand, within DVU0295at 341.376 kb on + strand, within DVU0295at 341.376 kb on + strand, within DVU0295at 341.410 kb on + strand, within DVU0295at 341.503 kb on - strand, within DVU0295at 341.521 kb on - strand, within DVU0295at 341.626 kb on + strand, within DVU0295at 341.670 kb on + strand, within DVU0295at 341.687 kb on + strand, within DVU0295at 341.695 kb on - strand, within DVU0295at 341.772 kb on + strandat 341.782 kb on - strandat 341.786 kb on - strandat 341.826 kb on - strandat 341.877 kb on + strandat 341.885 kb on - strandat 341.885 kb on - strandat 341.897 kb on + strandat 341.897 kb on + strandat 341.905 kb on - strandat 341.912 kb on + strandat 341.920 kb on - strandat 341.920 kb on - strandat 341.920 kb on - strandat 342.124 kb on - strand, within DVU0296at 342.394 kb on + strand, within DVU0296at 342.402 kb on + strand, within DVU0296at 342.528 kb on + strand, within DVU0296at 342.562 kb on + strand, within DVU0296at 342.581 kb on + strand, within DVU0296at 342.594 kb on - strand, within DVU0296at 342.623 kb on + strand, within DVU0296at 342.688 kb on + strand, within DVU0296at 342.698 kb on + strand, within DVU0296at 342.708 kb on + strand, within DVU0296at 342.713 kb on + strand, within DVU0296at 342.713 kb on + strand, within DVU0296at 342.713 kb on + strand, within DVU0296at 342.713 kb on + strand, within DVU0296at 342.713 kb on + strand, within DVU0296at 342.721 kb on - strand, within DVU0296at 342.721 kb on - strand, within DVU0296at 342.752 kb on - strand, within DVU0296at 342.760 kb on + strand, within DVU0296at 342.790 kb on - strand, within DVU0296at 342.864 kb on - strand, within DVU0296at 342.870 kb on - strand, within DVU0296at 342.870 kb on - strand, within DVU0296at 342.926 kb on + strandat 342.926 kb on + strandat 342.929 kb on - strandat 342.934 kb on - strandat 342.949 kb on - strandat 343.004 kb on - strandat 343.004 kb on - strandat 343.065 kb on - strandat 343.080 kb on + strandat 343.098 kb on - strandat 343.146 kb on + strandat 343.153 kb on + strandat 343.154 kb on - strandat 343.207 kb on + strandat 343.218 kb on + strandat 343.219 kb on + strandat 343.317 kb on - strandat 343.319 kb on + strandat 343.327 kb on - strandat 343.357 kb on + strandat 343.365 kb on - strandat 343.369 kb on + strandat 343.464 kb on - strandat 343.519 kb on - strandat 343.544 kb on + strandat 343.597 kb on + strandat 343.644 kb on + strandat 343.695 kb on + strand, within DVU0297at 343.698 kb on - strand, within DVU0297at 343.700 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.720 kb on + strand, within DVU0297at 343.721 kb on - strand, within DVU0297at 343.721 kb on - strand, within DVU0297at 343.721 kb on - strand, within DVU0297at 343.721 kb on - strand, within DVU0297at 343.728 kb on - strand, within DVU0297at 343.773 kb on + strand, within DVU0297at 343.783 kb on + strand, within DVU0297at 343.806 kb on - strand, within DVU0297at 343.851 kb on - strandat 343.872 kb on + strandat 343.906 kb on - strandat 343.949 kb on - strandat 343.975 kb on + strandat 343.983 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
remove
340,994 + DVU0295 0.38 +1.5
340,996 - DVU0295 0.38 -1.4
341,067 + DVU0295 0.43 -0.8
341,074 + DVU0295 0.44 -0.7
341,132 + DVU0295 0.48 -0.1
341,156 + DVU0295 0.50 -0.6
341,161 + DVU0295 0.50 -1.3
341,164 - DVU0295 0.50 -0.2
341,184 + DVU0295 0.52 +0.1
341,192 - DVU0295 0.53 -1.5
341,192 - DVU0295 0.53 -0.3
341,223 - DVU0295 0.55 -1.9
341,228 + DVU0295 0.55 -4.4
341,236 - DVU0295 0.56 -1.8
341,236 - DVU0295 0.56 -0.1
341,240 + DVU0295 0.56 -2.2
341,248 - DVU0295 0.57 +0.3
341,282 - DVU0295 0.59 +0.2
341,344 + DVU0295 0.64 -1.4
341,376 + DVU0295 0.66 -1.6
341,376 + DVU0295 0.66 -0.7
341,410 + DVU0295 0.69 -2.0
341,503 - DVU0295 0.76 -0.9
341,521 - DVU0295 0.77 -0.5
341,626 + DVU0295 0.85 -2.9
341,670 + DVU0295 0.88 -0.6
341,687 + DVU0295 0.89 -0.8
341,695 - DVU0295 0.90 -2.9
341,772 + -0.7
341,782 - -1.1
341,786 - -0.2
341,826 - +0.7
341,877 + -0.4
341,885 - +0.3
341,885 - -0.9
341,897 + -0.0
341,897 + -1.3
341,905 - -0.1
341,912 + -1.1
341,920 - -1.0
341,920 - -2.4
341,920 - +0.1
342,124 - DVU0296 0.18 +0.8
342,394 + DVU0296 0.43 -0.3
342,402 + DVU0296 0.44 -1.3
342,528 + DVU0296 0.56 -0.4
342,562 + DVU0296 0.59 -0.4
342,581 + DVU0296 0.61 -0.2
342,594 - DVU0296 0.62 -0.3
342,623 + DVU0296 0.65 -1.3
342,688 + DVU0296 0.71 -1.4
342,698 + DVU0296 0.72 -0.5
342,708 + DVU0296 0.73 -2.3
342,713 + DVU0296 0.73 -1.2
342,713 + DVU0296 0.73 -0.6
342,713 + DVU0296 0.73 -0.5
342,713 + DVU0296 0.73 -1.1
342,713 + DVU0296 0.73 +0.8
342,721 - DVU0296 0.74 +0.7
342,721 - DVU0296 0.74 -0.8
342,752 - DVU0296 0.77 -1.7
342,760 + DVU0296 0.77 -0.1
342,790 - DVU0296 0.80 -0.3
342,864 - DVU0296 0.87 -0.7
342,870 - DVU0296 0.88 -2.3
342,870 - DVU0296 0.88 +0.5
342,926 + -1.0
342,926 + -0.4
342,929 - -1.1
342,934 - -0.9
342,949 - -1.2
343,004 - +0.4
343,004 - +0.4
343,065 - -2.0
343,080 + +0.1
343,098 - +1.1
343,146 + +0.7
343,153 + -0.4
343,154 - -0.5
343,207 + +2.4
343,218 + -1.1
343,219 + -2.0
343,317 - -1.2
343,319 + +0.3
343,327 - +0.6
343,357 + +0.4
343,365 - +0.4
343,369 + -0.1
343,464 - -1.5
343,519 - -0.8
343,544 + -0.6
343,597 + -0.5
343,644 + -0.2
343,695 + DVU0297 0.27 +0.9
343,698 - DVU0297 0.29 -0.1
343,700 + DVU0297 0.30 +0.2
343,713 + DVU0297 0.36 -0.8
343,713 + DVU0297 0.36 -0.2
343,713 + DVU0297 0.36 +0.9
343,713 + DVU0297 0.36 -0.1
343,713 + DVU0297 0.36 +0.3
343,713 + DVU0297 0.36 +0.0
343,713 + DVU0297 0.36 -1.0
343,720 + DVU0297 0.40 +0.9
343,721 - DVU0297 0.41 -0.1
343,721 - DVU0297 0.41 +0.6
343,721 - DVU0297 0.41 +0.4
343,721 - DVU0297 0.41 -0.2
343,728 - DVU0297 0.44 +0.5
343,773 + DVU0297 0.67 -1.0
343,783 + DVU0297 0.72 -1.0
343,806 - DVU0297 0.84 +0.3
343,851 - +0.2
343,872 + +1.6
343,906 - +0.2
343,949 - -0.5
343,975 + -0.2
343,983 - -1.3

Or see this region's nucleotide sequence