Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0091

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwcaG and DVU0091 are separated by 52 nucleotidesDVU0091 and DVU0092 are separated by 56 nucleotides DVU0090: wcaG - GDP-fucose synthetase (TIGR), at 115,316 to 116,287 wcaG DVU0091: DVU0091 - conserved hypothetical protein (TIGR), at 116,340 to 117,062 DVU0091 DVU0092: DVU0092 - sensory box histidine kinase (TIGR), at 117,119 to 120,436 DVU0092 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2at 116.226 kb on + strandat 116.270 kb on + strandat 116.273 kb on - strandat 116.282 kb on + strandat 116.290 kb on - strandat 116.508 kb on - strand, within DVU0091at 116.535 kb on - strand, within DVU0091at 116.609 kb on + strand, within DVU0091at 116.617 kb on - strand, within DVU0091at 116.617 kb on - strand, within DVU0091at 116.687 kb on - strand, within DVU0091at 116.687 kb on - strand, within DVU0091at 116.696 kb on + strand, within DVU0091at 116.714 kb on - strand, within DVU0091at 116.714 kb on - strand, within DVU0091at 116.724 kb on + strand, within DVU0091at 116.764 kb on - strand, within DVU0091at 116.896 kb on - strand, within DVU0091at 116.915 kb on + strand, within DVU0091at 116.939 kb on + strand, within DVU0091at 117.224 kb on + strandat 117.224 kb on + strandat 117.289 kb on + strandat 117.314 kb on + strandat 117.329 kb on - strandat 117.361 kb on + strandat 117.378 kb on + strandat 117.573 kb on + strand, within DVU0092at 117.750 kb on - strand, within DVU0092at 117.804 kb on + strand, within DVU0092at 117.805 kb on - strand, within DVU0092at 117.812 kb on - strand, within DVU0092at 117.812 kb on - strand, within DVU0092at 117.850 kb on - strand, within DVU0092at 117.908 kb on - strand, within DVU0092at 118.012 kb on - strand, within DVU0092at 118.022 kb on + strand, within DVU0092at 118.030 kb on - strand, within DVU0092

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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116,226 + -0.8
116,270 + -1.0
116,273 - +0.6
116,282 + -1.0
116,290 - -1.0
116,508 - DVU0091 0.23 -1.3
116,535 - DVU0091 0.27 +0.6
116,609 + DVU0091 0.37 +0.8
116,617 - DVU0091 0.38 +1.1
116,617 - DVU0091 0.38 +1.2
116,687 - DVU0091 0.48 -0.1
116,687 - DVU0091 0.48 +1.1
116,696 + DVU0091 0.49 +0.4
116,714 - DVU0091 0.52 +1.3
116,714 - DVU0091 0.52 +0.9
116,724 + DVU0091 0.53 +0.7
116,764 - DVU0091 0.59 +0.8
116,896 - DVU0091 0.77 +1.2
116,915 + DVU0091 0.80 +1.7
116,939 + DVU0091 0.83 +0.9
117,224 + -0.4
117,224 + -0.0
117,289 + -0.8
117,314 + +0.2
117,329 - -0.0
117,361 + +1.1
117,378 + +2.0
117,573 + DVU0092 0.14 -1.9
117,750 - DVU0092 0.19 +0.4
117,804 + DVU0092 0.21 -1.6
117,805 - DVU0092 0.21 -1.1
117,812 - DVU0092 0.21 -1.9
117,812 - DVU0092 0.21 +1.2
117,850 - DVU0092 0.22 -1.3
117,908 - DVU0092 0.24 +0.2
118,012 - DVU0092 0.27 +0.1
118,022 + DVU0092 0.27 +0.7
118,030 - DVU0092 0.27 -0.1

Or see this region's nucleotide sequence