Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wcaG and DVU0091 are separated by 52 nucleotides DVU0091 and DVU0092 are separated by 56 nucleotides
DVU0090: wcaG - GDP-fucose synthetase (TIGR), at 115,316 to 116,287
wcaG
DVU0091: DVU0091 - conserved hypothetical protein (TIGR), at 116,340 to 117,062
DVU0091
DVU0092: DVU0092 - sensory box histidine kinase (TIGR), at 117,119 to 120,436
DVU0092
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 116.226 kb on + strand at 116.270 kb on + strand at 116.273 kb on - strand at 116.282 kb on + strand at 116.290 kb on - strand at 116.508 kb on - strand, within DVU0091 at 116.535 kb on - strand, within DVU0091 at 116.609 kb on + strand, within DVU0091 at 116.617 kb on - strand, within DVU0091 at 116.617 kb on - strand, within DVU0091 at 116.687 kb on - strand, within DVU0091 at 116.687 kb on - strand, within DVU0091 at 116.696 kb on + strand, within DVU0091 at 116.714 kb on - strand, within DVU0091 at 116.714 kb on - strand, within DVU0091 at 116.724 kb on + strand, within DVU0091 at 116.764 kb on - strand, within DVU0091 at 116.896 kb on - strand, within DVU0091 at 116.915 kb on + strand, within DVU0091 at 116.939 kb on + strand, within DVU0091 at 117.224 kb on + strand at 117.224 kb on + strand at 117.289 kb on + strand at 117.314 kb on + strand at 117.329 kb on - strand at 117.361 kb on + strand at 117.378 kb on + strand at 117.573 kb on + strand, within DVU0092 at 117.750 kb on - strand, within DVU0092 at 117.804 kb on + strand, within DVU0092 at 117.805 kb on - strand, within DVU0092 at 117.812 kb on - strand, within DVU0092 at 117.812 kb on - strand, within DVU0092 at 117.850 kb on - strand, within DVU0092 at 117.908 kb on - strand, within DVU0092 at 118.012 kb on - strand, within DVU0092 at 118.022 kb on + strand, within DVU0092 at 118.030 kb on - strand, within DVU0092
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 116,226 + -0.8 116,270 + -1.0 116,273 - +0.6 116,282 + -1.0 116,290 - -1.0 116,508 - DVU0091 0.23 -1.3 116,535 - DVU0091 0.27 +0.6 116,609 + DVU0091 0.37 +0.8 116,617 - DVU0091 0.38 +1.1 116,617 - DVU0091 0.38 +1.2 116,687 - DVU0091 0.48 -0.1 116,687 - DVU0091 0.48 +1.1 116,696 + DVU0091 0.49 +0.4 116,714 - DVU0091 0.52 +1.3 116,714 - DVU0091 0.52 +0.9 116,724 + DVU0091 0.53 +0.7 116,764 - DVU0091 0.59 +0.8 116,896 - DVU0091 0.77 +1.2 116,915 + DVU0091 0.80 +1.7 116,939 + DVU0091 0.83 +0.9 117,224 + -0.4 117,224 + -0.0 117,289 + -0.8 117,314 + +0.2 117,329 - -0.0 117,361 + +1.1 117,378 + +2.0 117,573 + DVU0092 0.14 -1.9 117,750 - DVU0092 0.19 +0.4 117,804 + DVU0092 0.21 -1.6 117,805 - DVU0092 0.21 -1.1 117,812 - DVU0092 0.21 -1.9 117,812 - DVU0092 0.21 +1.2 117,850 - DVU0092 0.22 -1.3 117,908 - DVU0092 0.24 +0.2 118,012 - DVU0092 0.27 +0.1 118,022 + DVU0092 0.27 +0.7 118,030 - DVU0092 0.27 -0.1
Or see this region's nucleotide sequence