Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dctM and DVU0010 overlap by 4 nucleotides DVU0010 and DVU0011 are separated by 61 nucleotides
DVU0009: dctM - DedA family protein (TIGR), at 11,681 to 12,961
dctM
DVU0010: DVU0010 - TRAP transporter, DctQ family (TIGR), at 12,958 to 13,524
DVU0010
DVU0011: DVU0011 - TRAP dicarboxylate family transporter (TIGR), at 13,586 to 14,611
DVU0011
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 11.977 kb on - strand, within dctM at 12.095 kb on - strand, within dctM at 12.096 kb on + strand, within dctM at 12.133 kb on - strand, within dctM at 12.214 kb on + strand, within dctM at 12.222 kb on + strand, within dctM at 12.222 kb on + strand, within dctM at 12.227 kb on + strand, within dctM at 12.230 kb on - strand, within dctM at 12.248 kb on - strand, within dctM at 12.301 kb on - strand, within dctM at 12.331 kb on - strand, within dctM at 12.385 kb on - strand, within dctM at 12.417 kb on + strand, within dctM at 12.425 kb on - strand, within dctM at 12.547 kb on - strand, within dctM at 12.547 kb on - strand, within dctM at 12.547 kb on - strand, within dctM at 12.554 kb on + strand, within dctM at 12.578 kb on + strand, within dctM at 12.641 kb on - strand, within dctM at 12.641 kb on - strand, within dctM at 12.665 kb on + strand, within dctM at 12.670 kb on - strand, within dctM at 12.698 kb on - strand, within dctM at 12.698 kb on - strand, within dctM at 12.753 kb on + strand, within dctM at 12.771 kb on + strand, within dctM at 12.811 kb on - strand, within dctM at 12.965 kb on - strand at 12.965 kb on - strand at 12.986 kb on - strand at 13.000 kb on - strand at 13.055 kb on + strand, within DVU0010 at 13.081 kb on - strand, within DVU0010 at 13.117 kb on - strand, within DVU0010 at 13.126 kb on - strand, within DVU0010 at 13.162 kb on - strand, within DVU0010 at 13.188 kb on - strand, within DVU0010 at 13.194 kb on + strand, within DVU0010 at 13.305 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.456 kb on - strand, within DVU0010 at 13.500 kb on + strand at 13.587 kb on + strand at 13.595 kb on - strand at 13.596 kb on - strand at 13.649 kb on - strand at 13.664 kb on - strand at 13.728 kb on + strand, within DVU0011 at 13.746 kb on - strand, within DVU0011 at 13.746 kb on - strand, within DVU0011 at 13.788 kb on - strand, within DVU0011 at 13.808 kb on + strand, within DVU0011 at 13.839 kb on + strand, within DVU0011 at 13.839 kb on + strand, within DVU0011 at 13.847 kb on - strand, within DVU0011 at 13.847 kb on - strand, within DVU0011 at 13.854 kb on + strand, within DVU0011 at 13.863 kb on + strand, within DVU0011 at 13.873 kb on + strand, within DVU0011 at 13.873 kb on - strand, within DVU0011 at 13.878 kb on + strand, within DVU0011 at 13.881 kb on - strand, within DVU0011 at 13.883 kb on + strand, within DVU0011 at 13.936 kb on - strand, within DVU0011 at 14.003 kb on + strand, within DVU0011 at 14.003 kb on + strand, within DVU0011 at 14.005 kb on + strand, within DVU0011 at 14.017 kb on + strand, within DVU0011 at 14.048 kb on + strand, within DVU0011 at 14.161 kb on - strand, within DVU0011 at 14.168 kb on - strand, within DVU0011 at 14.186 kb on + strand, within DVU0011 at 14.190 kb on - strand, within DVU0011 at 14.252 kb on - strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.354 kb on + strand, within DVU0011 at 14.379 kb on + strand, within DVU0011 at 14.389 kb on + strand, within DVU0011 at 14.394 kb on + strand, within DVU0011 at 14.394 kb on + strand, within DVU0011 at 14.402 kb on - strand, within DVU0011 at 14.407 kb on + strand, within DVU0011 at 14.458 kb on - strand, within DVU0011 at 14.490 kb on + strand, within DVU0011 at 14.495 kb on + strand, within DVU0011 at 14.498 kb on - strand, within DVU0011
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 11,977 - dctM DVU0009 0.23 -0.5 12,095 - dctM DVU0009 0.32 +0.0 12,096 + dctM DVU0009 0.32 +0.3 12,133 - dctM DVU0009 0.35 -0.6 12,214 + dctM DVU0009 0.42 +0.1 12,222 + dctM DVU0009 0.42 +0.3 12,222 + dctM DVU0009 0.42 -1.0 12,227 + dctM DVU0009 0.43 -1.0 12,230 - dctM DVU0009 0.43 -0.8 12,248 - dctM DVU0009 0.44 -0.5 12,301 - dctM DVU0009 0.48 +0.3 12,331 - dctM DVU0009 0.51 -0.7 12,385 - dctM DVU0009 0.55 -3.5 12,417 + dctM DVU0009 0.57 -2.0 12,425 - dctM DVU0009 0.58 +0.1 12,547 - dctM DVU0009 0.68 -1.2 12,547 - dctM DVU0009 0.68 -0.0 12,547 - dctM DVU0009 0.68 +0.4 12,554 + dctM DVU0009 0.68 -0.9 12,578 + dctM DVU0009 0.70 -0.5 12,641 - dctM DVU0009 0.75 -1.1 12,641 - dctM DVU0009 0.75 -0.5 12,665 + dctM DVU0009 0.77 +0.4 12,670 - dctM DVU0009 0.77 +0.2 12,698 - dctM DVU0009 0.79 +2.2 12,698 - dctM DVU0009 0.79 -0.0 12,753 + dctM DVU0009 0.84 +0.4 12,771 + dctM DVU0009 0.85 -0.1 12,811 - dctM DVU0009 0.88 +0.5 12,965 - -0.9 12,965 - +1.0 12,986 - +0.8 13,000 - -0.8 13,055 + DVU0010 0.17 +0.6 13,081 - DVU0010 0.22 +1.3 13,117 - DVU0010 0.28 +1.8 13,126 - DVU0010 0.30 -0.1 13,162 - DVU0010 0.36 -0.3 13,188 - DVU0010 0.41 +0.4 13,194 + DVU0010 0.42 -1.8 13,305 + DVU0010 0.61 -0.2 13,448 + DVU0010 0.86 +1.0 13,448 + DVU0010 0.86 +1.3 13,448 + DVU0010 0.86 -2.2 13,456 - DVU0010 0.88 -0.7 13,500 + -0.5 13,587 + +0.3 13,595 - -0.1 13,596 - -0.5 13,649 - +0.2 13,664 - +0.2 13,728 + DVU0011 0.14 -0.6 13,746 - DVU0011 0.16 +0.3 13,746 - DVU0011 0.16 +0.7 13,788 - DVU0011 0.20 +0.4 13,808 + DVU0011 0.22 -0.3 13,839 + DVU0011 0.25 -0.6 13,839 + DVU0011 0.25 +0.7 13,847 - DVU0011 0.25 +0.0 13,847 - DVU0011 0.25 -1.4 13,854 + DVU0011 0.26 -0.1 13,863 + DVU0011 0.27 +0.0 13,873 + DVU0011 0.28 +0.1 13,873 - DVU0011 0.28 +0.6 13,878 + DVU0011 0.28 -0.4 13,881 - DVU0011 0.29 -0.1 13,883 + DVU0011 0.29 -0.5 13,936 - DVU0011 0.34 +0.0 14,003 + DVU0011 0.41 +0.9 14,003 + DVU0011 0.41 +0.2 14,005 + DVU0011 0.41 -1.0 14,017 + DVU0011 0.42 -0.6 14,048 + DVU0011 0.45 -0.5 14,161 - DVU0011 0.56 -3.6 14,168 - DVU0011 0.57 -0.9 14,186 + DVU0011 0.58 +0.7 14,190 - DVU0011 0.59 -0.1 14,252 - DVU0011 0.65 -0.2 14,328 + DVU0011 0.72 +0.5 14,328 + DVU0011 0.72 -0.9 14,328 + DVU0011 0.72 -0.0 14,328 + DVU0011 0.72 +0.5 14,336 - DVU0011 0.73 -0.9 14,336 - DVU0011 0.73 -0.1 14,336 - DVU0011 0.73 -2.1 14,336 - DVU0011 0.73 +0.2 14,336 - DVU0011 0.73 +1.2 14,354 + DVU0011 0.75 +0.8 14,379 + DVU0011 0.77 +0.6 14,389 + DVU0011 0.78 +0.1 14,394 + DVU0011 0.79 +0.0 14,394 + DVU0011 0.79 +0.8 14,402 - DVU0011 0.80 -0.5 14,407 + DVU0011 0.80 -0.4 14,458 - DVU0011 0.85 -0.7 14,490 + DVU0011 0.88 +0.1 14,495 + DVU0011 0.89 +0.3 14,498 - DVU0011 0.89 +0.6
Or see this region's nucleotide sequence