Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3126

Experiment: MoYLS4 with DMSO 10%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with DMSO 10%
3,272,338	+		DVU3125	0.27	+0.1
3,272,339	+		DVU3125	0.27	+0.2
3,272,339	+		DVU3125	0.27	+0.2
3,272,347	-		DVU3125	0.28	-0.1
3,272,347	-		DVU3125	0.28	-0.8
3,272,375	+		DVU3125	0.33	-3.4
3,272,425	-		DVU3125	0.41	-0.5
3,272,484	+		DVU3125	0.50	+0.1
3,272,497	+		DVU3125	0.52	-1.0
3,272,569	+		DVU3125	0.64	+0.1
3,272,644	+		DVU3125	0.76	+0.2
3,272,654	+		DVU3125	0.77	+0.2
3,272,657	-		DVU3125	0.78	-0.2
3,272,700	-		DVU3125	0.85	-1.6
3,272,722	-		DVU3125	0.88	+0.1
3,272,732	-				-1.2
3,272,740	-				-1.1
3,272,800	+				+0.1
3,272,808	-				-0.8
3,272,841	-				+1.2
3,272,841	-				-0.3
3,272,852	+				+0.1
3,272,906	+				+0.5
3,272,908	+				+0.0
3,272,916	-				+0.8
3,272,940	+				-0.2
3,272,940	+				+0.2
3,272,940	+				-1.1
3,273,015	-				-0.1
3,273,025	+				-0.9
3,273,033	-				+0.1
3,273,162	+				+0.3
3,273,223	-				-0.1
3,273,223	-				-1.0
3,273,300	+				+0.1
3,273,321	-				-1.1
3,273,409	-				-3.1
3,273,564	+	pqiA	DVU3126	0.20	-0.6
3,273,603	+	pqiA	DVU3126	0.23	-0.4
3,273,609	-	pqiA	DVU3126	0.24	-1.8
3,273,656	-	pqiA	DVU3126	0.28	+0.4
3,273,670	-	pqiA	DVU3126	0.29	-0.9
3,273,712	+	pqiA	DVU3126	0.32	+0.7
3,273,720	-	pqiA	DVU3126	0.33	-0.8
3,273,720	-	pqiA	DVU3126	0.33	-0.7
3,273,782	-	pqiA	DVU3126	0.38	-0.1
3,273,864	-	pqiA	DVU3126	0.44	-1.8
3,273,874	-	pqiA	DVU3126	0.45	-3.2
3,273,895	-	pqiA	DVU3126	0.47	-0.6
3,273,945	-	pqiA	DVU3126	0.51	-0.5
3,274,037	-	pqiA	DVU3126	0.59	-0.1
3,274,064	+	pqiA	DVU3126	0.61	-0.0
3,274,066	+	pqiA	DVU3126	0.61	-0.8
3,274,082	-	pqiA	DVU3126	0.62	-0.8
3,274,157	-	pqiA	DVU3126	0.68	-0.0
3,274,162	-	pqiA	DVU3126	0.69	+0.8
3,274,164	+	pqiA	DVU3126	0.69	-1.8
3,274,164	+	pqiA	DVU3126	0.69	-0.2
3,274,172	-	pqiA	DVU3126	0.69	-1.3
3,274,223	-	pqiA	DVU3126	0.74	-0.1
3,274,326	+	pqiA	DVU3126	0.82	+1.1
3,274,334	-	pqiA	DVU3126	0.83	+0.3
3,274,334	-	pqiA	DVU3126	0.83	-0.6
3,274,339	-	pqiA	DVU3126	0.83	-1.9
3,274,411	-	pqiA	DVU3126	0.89	+0.3
3,274,470	+				+0.3
3,274,483	-				-3.0
3,274,495	+				-0.3
3,274,556	-				+0.4
3,274,563	+				+1.0
3,274,571	-				-0.8
3,274,588	+				-0.8
3,274,602	+				-0.3
3,274,609	+				+0.6
3,274,621	-				-0.3
3,274,675	-				-0.3
3,274,723	-	pqiB	DVU3127	0.11	-0.0
3,274,723	-	pqiB	DVU3127	0.11	-0.4
3,274,762	+	pqiB	DVU3127	0.14	+0.5
3,274,765	-	pqiB	DVU3127	0.14	-0.7
3,274,765	-	pqiB	DVU3127	0.14	+0.3
3,274,770	-	pqiB	DVU3127	0.14	-0.2
3,274,802	-	pqiB	DVU3127	0.16	+0.1
3,274,814	+	pqiB	DVU3127	0.17	-1.2
3,274,822	-	pqiB	DVU3127	0.17	+0.0
3,274,863	+	pqiB	DVU3127	0.20	+0.0
3,274,863	+	pqiB	DVU3127	0.20	-0.8
3,274,919	-	pqiB	DVU3127	0.23	-1.3
3,274,920	+	pqiB	DVU3127	0.23	+0.6
3,274,954	-	pqiB	DVU3127	0.26	-0.3
3,274,997	+	pqiB	DVU3127	0.28	+0.2
3,275,123	+	pqiB	DVU3127	0.36	-0.0
3,275,142	+	pqiB	DVU3127	0.37	-1.0
3,275,152	+	pqiB	DVU3127	0.38	-0.3
3,275,158	+	pqiB	DVU3127	0.38	-0.1
3,275,181	+	pqiB	DVU3127	0.39	-1.4
3,275,222	+	pqiB	DVU3127	0.42	-0.3
3,275,232	+	pqiB	DVU3127	0.43	-0.4
3,275,250	-	pqiB	DVU3127	0.44	-0.7
3,275,258	-	pqiB	DVU3127	0.44	-0.2
3,275,308	-	pqiB	DVU3127	0.47	+2.3
3,275,316	-	pqiB	DVU3127	0.48	-1.4
3,275,341	+	pqiB	DVU3127	0.49	+0.7
3,275,362	-	pqiB	DVU3127	0.51	-0.5
3,275,366	+	pqiB	DVU3127	0.51	-0.3
3,275,467	+	pqiB	DVU3127	0.57	-0.1
3,275,535	+	pqiB	DVU3127	0.61	+0.1