Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaC-2 and DVU3109 are separated by 193 nucleotides DVU3109 and DVU3110 are separated by 39 nucleotides
DVU3108: nhaC-2 - Na+/H+ antiporter NhaC (TIGR), at 3,256,819 to 3,258,246
nhaC-2
DVU3109: DVU3109 - iron-sulfur cluster-binding protein (TIGR), at 3,258,440 to 3,258,640
DVU3109
DVU3110: DVU3110 - L-aspartate oxidase, putative (TIGR), at 3,258,680 to 3,260,401
DVU3110
Position (kb)
3258
3259 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3257.501 kb on + strand, within nhaC-2 at 3257.561 kb on + strand, within nhaC-2 at 3257.561 kb on + strand, within nhaC-2 at 3257.576 kb on + strand, within nhaC-2 at 3257.584 kb on - strand, within nhaC-2 at 3257.584 kb on - strand, within nhaC-2 at 3257.609 kb on + strand, within nhaC-2 at 3257.609 kb on + strand, within nhaC-2 at 3257.617 kb on - strand, within nhaC-2 at 3257.617 kb on - strand, within nhaC-2 at 3257.617 kb on - strand, within nhaC-2 at 3257.617 kb on - strand, within nhaC-2 at 3257.617 kb on - strand, within nhaC-2 at 3257.617 kb on - strand, within nhaC-2 at 3257.617 kb on - strand, within nhaC-2 at 3257.626 kb on + strand, within nhaC-2 at 3257.706 kb on + strand, within nhaC-2 at 3257.726 kb on + strand, within nhaC-2 at 3257.760 kb on + strand, within nhaC-2 at 3257.815 kb on - strand, within nhaC-2 at 3257.832 kb on + strand, within nhaC-2 at 3257.878 kb on + strand, within nhaC-2 at 3257.936 kb on - strand, within nhaC-2 at 3258.038 kb on + strand, within nhaC-2 at 3258.162 kb on + strand at 3258.165 kb on - strand at 3258.170 kb on - strand at 3258.196 kb on + strand at 3258.196 kb on + strand at 3258.204 kb on - strand at 3258.222 kb on + strand at 3258.326 kb on - strand at 3258.398 kb on + strand at 3258.407 kb on - strand at 3258.411 kb on + strand at 3258.419 kb on - strand at 3258.429 kb on - strand at 3258.454 kb on + strand at 3258.492 kb on + strand, within DVU3109 at 3258.531 kb on + strand, within DVU3109 at 3258.606 kb on - strand, within DVU3109 at 3258.626 kb on - strand at 3258.678 kb on + strand at 3258.773 kb on - strand at 3258.945 kb on + strand, within DVU3110 at 3259.061 kb on - strand, within DVU3110 at 3259.066 kb on - strand, within DVU3110 at 3259.156 kb on - strand, within DVU3110 at 3259.178 kb on + strand, within DVU3110 at 3259.199 kb on + strand, within DVU3110 at 3259.347 kb on - strand, within DVU3110 at 3259.350 kb on + strand, within DVU3110 at 3259.430 kb on + strand, within DVU3110 at 3259.455 kb on + strand, within DVU3110 at 3259.463 kb on - strand, within DVU3110 at 3259.463 kb on - strand, within DVU3110 at 3259.483 kb on + strand, within DVU3110 at 3259.530 kb on + strand, within DVU3110 at 3259.567 kb on + strand, within DVU3110 at 3259.575 kb on - strand, within DVU3110 at 3259.612 kb on + strand, within DVU3110 at 3259.620 kb on - strand, within DVU3110
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 3,257,501 + nhaC-2 DVU3108 0.48 -0.0 3,257,561 + nhaC-2 DVU3108 0.52 -0.4 3,257,561 + nhaC-2 DVU3108 0.52 +0.0 3,257,576 + nhaC-2 DVU3108 0.53 +0.7 3,257,584 - nhaC-2 DVU3108 0.54 +0.2 3,257,584 - nhaC-2 DVU3108 0.54 -0.3 3,257,609 + nhaC-2 DVU3108 0.55 -1.5 3,257,609 + nhaC-2 DVU3108 0.55 +0.1 3,257,617 - nhaC-2 DVU3108 0.56 -1.4 3,257,617 - nhaC-2 DVU3108 0.56 -0.3 3,257,617 - nhaC-2 DVU3108 0.56 -0.1 3,257,617 - nhaC-2 DVU3108 0.56 -0.6 3,257,617 - nhaC-2 DVU3108 0.56 -0.6 3,257,617 - nhaC-2 DVU3108 0.56 +0.0 3,257,617 - nhaC-2 DVU3108 0.56 +0.3 3,257,626 + nhaC-2 DVU3108 0.57 -0.7 3,257,706 + nhaC-2 DVU3108 0.62 +1.7 3,257,726 + nhaC-2 DVU3108 0.64 -0.2 3,257,760 + nhaC-2 DVU3108 0.66 +0.4 3,257,815 - nhaC-2 DVU3108 0.70 -0.1 3,257,832 + nhaC-2 DVU3108 0.71 -0.3 3,257,878 + nhaC-2 DVU3108 0.74 +1.9 3,257,936 - nhaC-2 DVU3108 0.78 +1.4 3,258,038 + nhaC-2 DVU3108 0.85 +0.5 3,258,162 + -0.6 3,258,165 - +0.4 3,258,170 - +0.4 3,258,196 + -1.3 3,258,196 + -1.3 3,258,204 - -0.6 3,258,222 + +0.6 3,258,326 - +0.6 3,258,398 + -0.7 3,258,407 - -0.0 3,258,411 + -1.6 3,258,419 - -0.2 3,258,429 - -0.3 3,258,454 + +0.3 3,258,492 + DVU3109 0.26 -2.9 3,258,531 + DVU3109 0.45 -0.9 3,258,606 - DVU3109 0.83 -0.3 3,258,626 - -0.2 3,258,678 + -0.3 3,258,773 - -0.3 3,258,945 + DVU3110 0.15 -0.0 3,259,061 - DVU3110 0.22 -0.4 3,259,066 - DVU3110 0.22 +0.1 3,259,156 - DVU3110 0.28 -0.2 3,259,178 + DVU3110 0.29 -1.7 3,259,199 + DVU3110 0.30 +0.4 3,259,347 - DVU3110 0.39 +0.2 3,259,350 + DVU3110 0.39 -0.0 3,259,430 + DVU3110 0.44 -1.3 3,259,455 + DVU3110 0.45 -1.8 3,259,463 - DVU3110 0.45 -0.9 3,259,463 - DVU3110 0.45 -0.1 3,259,483 + DVU3110 0.47 -0.8 3,259,530 + DVU3110 0.49 -3.0 3,259,567 + DVU3110 0.52 +0.3 3,259,575 - DVU3110 0.52 -0.7 3,259,612 + DVU3110 0.54 -1.6 3,259,620 - DVU3110 0.55 +0.8
Or see this region's nucleotide sequence