Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2591

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2590 and DVU2591 are separated by 145 nucleotidesDVU2591 and DVU2592 overlap by 8 nucleotidesDVU2592 and DORF19110 are separated by 2 nucleotides DVU2590: DVU2590 - sensory box protein (TIGR), at 2,713,242 to 2,714,807 DVU2590 DVU2591: DVU2591 - tail fiber assembly protein, putative (TIGR), at 2,714,953 to 2,715,462 DVU2591 DVU2592: DVU2592 - hypothetical protein (TIGR), at 2,715,455 to 2,715,793 DVU2592 DORF19110: DORF19110 - SEED: FIG00607238: hypothetical protein, at 2,715,796 to 2,716,848 DORF19110 Position (kb) 2714 2715 2716Strain fitness (log2 ratio) -3 -2 -1 0 1at 2713.996 kb on + strand, within DVU2590at 2713.996 kb on + strand, within DVU2590at 2714.085 kb on - strand, within DVU2590at 2714.158 kb on - strand, within DVU2590at 2714.278 kb on + strand, within DVU2590at 2714.364 kb on - strand, within DVU2590at 2714.364 kb on - strand, within DVU2590at 2714.395 kb on + strand, within DVU2590at 2714.403 kb on - strand, within DVU2590at 2714.405 kb on + strand, within DVU2590at 2714.414 kb on + strand, within DVU2590at 2714.469 kb on - strand, within DVU2590at 2714.509 kb on + strand, within DVU2590at 2714.560 kb on + strand, within DVU2590at 2714.612 kb on + strand, within DVU2590at 2714.662 kb on - strandat 2714.675 kb on - strandat 2714.750 kb on + strandat 2714.758 kb on - strandat 2714.849 kb on + strandat 2714.883 kb on - strandat 2714.958 kb on - strandat 2714.965 kb on + strandat 2714.986 kb on - strandat 2715.032 kb on - strand, within DVU2591at 2715.060 kb on + strand, within DVU2591at 2715.294 kb on + strand, within DVU2591at 2715.339 kb on - strand, within DVU2591at 2715.385 kb on - strand, within DVU2591at 2715.399 kb on + strand, within DVU2591at 2715.472 kb on + strandat 2715.724 kb on + strand, within DVU2592at 2715.731 kb on + strand, within DVU2592at 2715.731 kb on + strand, within DVU2592at 2715.731 kb on + strand, within DVU2592at 2715.731 kb on + strand, within DVU2592at 2715.848 kb on - strandat 2716.216 kb on - strand, within DORF19110at 2716.282 kb on + strand, within DORF19110at 2716.304 kb on + strand, within DORF19110at 2716.309 kb on + strand, within DORF19110at 2716.327 kb on - strand, within DORF19110

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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2,713,996 + DVU2590 0.48 -0.9
2,713,996 + DVU2590 0.48 -0.5
2,714,085 - DVU2590 0.54 -0.5
2,714,158 - DVU2590 0.58 -0.2
2,714,278 + DVU2590 0.66 -0.8
2,714,364 - DVU2590 0.72 +0.1
2,714,364 - DVU2590 0.72 -0.1
2,714,395 + DVU2590 0.74 -0.2
2,714,403 - DVU2590 0.74 -0.3
2,714,405 + DVU2590 0.74 -1.0
2,714,414 + DVU2590 0.75 -0.3
2,714,469 - DVU2590 0.78 -2.0
2,714,509 + DVU2590 0.81 -0.7
2,714,560 + DVU2590 0.84 +1.2
2,714,612 + DVU2590 0.87 +0.7
2,714,662 - -2.0
2,714,675 - -0.0
2,714,750 + -0.0
2,714,758 - +0.3
2,714,849 + +0.2
2,714,883 - -2.0
2,714,958 - -1.0
2,714,965 + +1.0
2,714,986 - -1.0
2,715,032 - DVU2591 0.15 +0.6
2,715,060 + DVU2591 0.21 -0.8
2,715,294 + DVU2591 0.67 -1.0
2,715,339 - DVU2591 0.76 -0.9
2,715,385 - DVU2591 0.85 -3.1
2,715,399 + DVU2591 0.87 -0.1
2,715,472 + -0.1
2,715,724 + DVU2592 0.79 +0.3
2,715,731 + DVU2592 0.81 -0.6
2,715,731 + DVU2592 0.81 +0.1
2,715,731 + DVU2592 0.81 -0.1
2,715,731 + DVU2592 0.81 -0.3
2,715,848 - -1.1
2,716,216 - DORF19110 0.40 -1.1
2,716,282 + DORF19110 0.46 -1.3
2,716,304 + DORF19110 0.48 -0.7
2,716,309 + DORF19110 0.49 -0.8
2,716,327 - DORF19110 0.50 +0.2

Or see this region's nucleotide sequence