Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2496

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2494 and DVU2495 are separated by 74 nucleotidesDVU2495 and DVU2496 are separated by 29 nucleotidesDVU2496 and DVU2497 are separated by 235 nucleotidesDVU2497 and DVU2498 are separated by 24 nucleotides DVU2494: DVU2494 - peptidase, M48 family (TIGR), at 2,606,430 to 2,607,290 DVU2494 DVU2495: DVU2495 - thioesterase family protein (TIGR), at 2,607,365 to 2,607,898 DVU2495 DVU2496: DVU2496 - lipoprotein, putative (TIGR), at 2,607,928 to 2,608,380 DVU2496 DVU2497: DVU2497 - lipoprotein, putative (TIGR), at 2,608,616 to 2,609,350 DVU2497 DVU2498: DVU2498 - hypothetical protein (TIGR), at 2,609,375 to 2,609,668 DVU2498 Position (kb) 2607 2608 2609Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2607.085 kb on - strand, within DVU2494at 2607.100 kb on - strand, within DVU2494at 2607.208 kb on + strandat 2607.251 kb on + strandat 2607.285 kb on + strandat 2607.293 kb on - strandat 2607.361 kb on + strandat 2607.495 kb on + strand, within DVU2495at 2607.771 kb on - strand, within DVU2495at 2607.886 kb on + strandat 2607.906 kb on - strandat 2607.919 kb on - strandat 2608.034 kb on + strand, within DVU2496at 2608.070 kb on + strand, within DVU2496at 2608.281 kb on + strand, within DVU2496at 2608.281 kb on + strand, within DVU2496at 2608.281 kb on + strand, within DVU2496at 2608.281 kb on + strand, within DVU2496at 2608.289 kb on - strand, within DVU2496at 2608.324 kb on + strand, within DVU2496at 2608.336 kb on + strandat 2608.338 kb on + strandat 2608.403 kb on - strandat 2608.503 kb on + strandat 2608.566 kb on + strandat 2608.714 kb on - strand, within DVU2497at 2608.806 kb on - strand, within DVU2497at 2608.839 kb on + strand, within DVU2497at 2608.860 kb on + strand, within DVU2497at 2609.010 kb on - strand, within DVU2497at 2609.050 kb on + strand, within DVU2497at 2609.050 kb on + strand, within DVU2497at 2609.050 kb on + strand, within DVU2497at 2609.058 kb on - strand, within DVU2497at 2609.058 kb on - strand, within DVU2497at 2609.109 kb on + strand, within DVU2497at 2609.145 kb on - strand, within DVU2497at 2609.244 kb on + strand, within DVU2497at 2609.353 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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2,607,085 - DVU2494 0.76 -1.3
2,607,100 - DVU2494 0.78 -2.5
2,607,208 + -1.4
2,607,251 + -0.4
2,607,285 + -0.2
2,607,293 - +1.2
2,607,361 + -0.2
2,607,495 + DVU2495 0.24 -1.8
2,607,771 - DVU2495 0.76 +0.3
2,607,886 + -1.4
2,607,906 - -0.2
2,607,919 - -1.1
2,608,034 + DVU2496 0.23 -2.0
2,608,070 + DVU2496 0.31 -0.8
2,608,281 + DVU2496 0.78 -0.6
2,608,281 + DVU2496 0.78 -0.9
2,608,281 + DVU2496 0.78 -0.2
2,608,281 + DVU2496 0.78 -0.9
2,608,289 - DVU2496 0.80 -0.0
2,608,324 + DVU2496 0.87 -4.0
2,608,336 + -2.9
2,608,338 + -1.5
2,608,403 - +0.2
2,608,503 + -0.2
2,608,566 + -1.4
2,608,714 - DVU2497 0.13 +0.1
2,608,806 - DVU2497 0.26 -0.6
2,608,839 + DVU2497 0.30 +0.4
2,608,860 + DVU2497 0.33 +0.1
2,609,010 - DVU2497 0.54 -0.6
2,609,050 + DVU2497 0.59 -0.7
2,609,050 + DVU2497 0.59 -1.0
2,609,050 + DVU2497 0.59 -0.2
2,609,058 - DVU2497 0.60 +0.0
2,609,058 - DVU2497 0.60 -0.6
2,609,109 + DVU2497 0.67 +1.0
2,609,145 - DVU2497 0.72 -0.4
2,609,244 + DVU2497 0.85 -0.2
2,609,353 - -0.2

Or see this region's nucleotide sequence