Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2461
Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with DMSO 10% |
---|---|---|---|---|---|
remove | |||||
2,565,509 | + | -1.0 | |||
2,565,539 | - | -0.0 | |||
2,565,546 | - | +1.6 | |||
2,565,564 | - | +0.0 | |||
2,565,574 | + | +0.4 | |||
2,565,574 | + | -0.4 | |||
2,565,582 | - | -0.2 | |||
2,565,605 | + | -0.1 | |||
2,565,605 | + | -0.1 | |||
2,565,613 | - | -1.4 | |||
2,565,615 | + | -0.4 | |||
2,565,623 | - | -0.4 | |||
2,566,171 | + | +1.3 | |||
2,566,195 | + | -1.8 | |||
2,566,201 | + | -2.3 | |||
2,566,222 | - | -0.5 | |||
2,566,227 | - | -0.6 | |||
2,566,265 | - | -1.1 | |||
2,566,297 | - | appB | DVU2461 | 0.11 | -1.5 |
2,566,328 | + | appB | DVU2461 | 0.14 | -1.9 |
2,566,363 | - | appB | DVU2461 | 0.17 | -2.2 |
2,566,449 | - | appB | DVU2461 | 0.25 | -0.5 |
2,566,510 | + | appB | DVU2461 | 0.31 | -1.2 |
2,566,620 | + | appB | DVU2461 | 0.42 | -1.7 |
2,566,628 | - | appB | DVU2461 | 0.43 | -1.3 |
2,566,702 | + | appB | DVU2461 | 0.50 | -0.2 |
2,566,767 | - | appB | DVU2461 | 0.57 | -1.5 |
2,566,809 | + | appB | DVU2461 | 0.61 | -0.2 |
2,566,826 | + | appB | DVU2461 | 0.62 | -0.4 |
2,566,881 | + | appB | DVU2461 | 0.68 | -0.5 |
2,566,897 | + | appB | DVU2461 | 0.69 | -0.7 |
2,566,902 | + | appB | DVU2461 | 0.70 | -1.8 |
2,566,902 | + | appB | DVU2461 | 0.70 | +0.1 |
2,566,902 | + | appB | DVU2461 | 0.70 | -1.0 |
2,566,902 | + | appB | DVU2461 | 0.70 | -1.9 |
2,566,902 | + | appB | DVU2461 | 0.70 | +0.0 |
2,566,902 | + | appB | DVU2461 | 0.70 | -1.3 |
2,566,910 | - | appB | DVU2461 | 0.71 | -1.0 |
2,566,910 | - | appB | DVU2461 | 0.71 | -0.5 |
2,566,910 | - | appB | DVU2461 | 0.71 | -1.7 |
2,566,910 | - | appB | DVU2461 | 0.71 | -0.0 |
2,566,910 | - | appB | DVU2461 | 0.71 | -1.0 |
2,566,942 | + | appB | DVU2461 | 0.74 | +0.6 |
2,566,950 | - | appB | DVU2461 | 0.75 | +0.4 |
2,567,038 | - | appB | DVU2461 | 0.83 | -1.3 |
2,567,056 | + | appB | DVU2461 | 0.85 | -1.3 |
2,567,056 | + | appB | DVU2461 | 0.85 | -0.9 |
2,567,058 | - | appB | DVU2461 | 0.85 | -0.1 |
2,567,066 | - | appB | DVU2461 | 0.86 | -2.1 |
2,567,085 | - | appB | DVU2461 | 0.88 | +0.3 |
2,567,102 | - | appB | DVU2461 | 0.90 | -0.9 |
2,567,103 | - | appB | DVU2461 | 0.90 | -2.4 |
2,567,113 | - | -1.6 | |||
2,567,155 | - | -1.9 | |||
2,567,157 | + | -2.0 | |||
2,567,160 | - | +0.7 | |||
2,567,190 | + | -1.8 | |||
2,567,192 | + | -1.4 | |||
2,567,200 | - | -0.0 | |||
2,567,222 | - | -0.2 | |||
2,567,245 | - | -0.5 | |||
2,567,247 | - | -1.3 | |||
2,567,280 | - | -0.2 | |||
2,567,355 | - | DVU2462 | 0.17 | -0.2 | |
2,567,486 | + | DVU2462 | 0.31 | -0.7 | |
2,567,539 | - | DVU2462 | 0.37 | -0.4 | |
2,567,577 | - | DVU2462 | 0.41 | -1.8 | |
2,567,661 | - | DVU2462 | 0.50 | -0.6 | |
2,567,755 | + | DVU2462 | 0.61 | -1.0 | |
2,567,817 | + | DVU2462 | 0.68 | -0.2 | |
2,567,830 | + | DVU2462 | 0.69 | -0.7 | |
2,567,838 | - | DVU2462 | 0.70 | -1.1 | |
2,567,838 | - | DVU2462 | 0.70 | -0.6 | |
2,567,838 | - | DVU2462 | 0.70 | -1.8 | |
2,567,882 | - | DVU2462 | 0.75 | -2.0 | |
2,567,967 | + | DVU2462 | 0.84 | -0.1 | |
2,568,016 | + | DVU2462 | 0.90 | -0.7 | |
2,568,034 | + | -1.4 | |||
2,568,049 | + | -0.9 | |||
2,568,132 | + | -1.6 | |||
2,568,140 | - | -0.3 | |||
2,568,176 | + | +0.3 | |||
2,568,184 | - | -1.1 |
Or see this region's nucleotide sequence