Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2292
Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with DMSO 10% |
---|---|---|---|---|---|
remove | |||||
2,383,775 | + | DVU2291 | 0.12 | -3.1 | |
2,383,819 | - | DVU2291 | 0.16 | +0.5 | |
2,384,062 | + | DVU2291 | 0.38 | -0.9 | |
2,384,276 | - | DVU2291 | 0.58 | -1.1 | |
2,384,352 | + | DVU2291 | 0.64 | -1.2 | |
2,384,556 | + | DVU2291 | 0.83 | -1.0 | |
2,384,716 | - | -1.2 | |||
2,384,850 | + | hypA | DVU2292 | 0.27 | -1.0 |
2,384,863 | - | hypA | DVU2292 | 0.31 | -2.5 |
2,384,876 | + | hypA | DVU2292 | 0.34 | -1.2 |
2,384,949 | + | hypA | DVU2292 | 0.55 | -1.1 |
2,385,084 | - | -0.9 | |||
2,385,304 | + | cooF | DVU2293 | 0.37 | -2.6 |
2,385,519 | + | cooF | DVU2293 | 0.78 | +1.0 |
2,385,568 | + | cooF | DVU2293 | 0.88 | -0.2 |
2,385,592 | - | -0.9 | |||
2,385,639 | - | -0.5 | |||
2,385,702 | + | -2.3 | |||
2,385,746 | - | -0.0 | |||
2,385,856 | + | +0.3 | |||
2,385,864 | - | -4.1 | |||
2,385,966 | - | DVU2294 | 0.13 | -1.0 | |
2,385,997 | - | DVU2294 | 0.16 | +0.2 | |
2,386,056 | + | DVU2294 | 0.21 | +0.0 |
Or see this region's nucleotide sequence