Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1572

Experiment: MoYLS4 with DMSO 10%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrho and DVU1572 are separated by 326 nucleotidesDVU1572 and pth are separated by 114 nucleotidespth and rplY are separated by 114 nucleotides DVU1571: rho - transcription termination factor Rho (TIGR), at 1,653,748 to 1,654,998 rho DVU1572: DVU1572 - transcriptional regulator, CarD family (TIGR), at 1,655,325 to 1,655,840 DVU1572 DVU1573: pth - peptidyl-tRNA hydrolase (TIGR), at 1,655,955 to 1,656,560 pth DVU1574: rplY - ribosomal protein L25 (TIGR), at 1,656,675 to 1,657,247 rplY Position (kb) 1655 1656Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1654.334 kb on - strand, within rhoat 1655.297 kb on + strandat 1655.513 kb on + strand, within DVU1572at 1655.578 kb on + strand, within DVU1572at 1655.817 kb on - strandat 1655.821 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
remove
1,654,334 - rho DVU1571 0.47 -0.4
1,655,297 + -4.0
1,655,513 + DVU1572 0.36 -2.2
1,655,578 + DVU1572 0.49 -2.3
1,655,817 - -3.1
1,655,821 + -2.0

Or see this region's nucleotide sequence