Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt isf-1 and DVU0821 are separated by 403 nucleotides DVU0821 and DVU0822 are separated by 11 nucleotides DVU0822 and tRNA-Ser are separated by 155 nucleotides
DVU0819: isf-1 - FMN reductase, NADPH-dependent (TIGR), at 908,890 to 909,507
isf-1
DVU0821: DVU0821 - conserved hypothetical protein (TIGR), at 909,911 to 910,510
DVU0821
DVU0822: DVU0822 - hypothetical protein (TIGR), at 910,522 to 911,178
DVU0822
DVU_tRNA-Ser-3: tRNA-Ser - tRNA with anticodon GCT for Ser (VIMSS-AUTO), at 911,334 to 911,428
tRNA-Ser
Position (kb) 909
910
911 Strain fitness (log2 ratio) -2
-1
0
1 at 908.945 kb on + strand at 908.947 kb on - strand at 908.966 kb on + strand, within isf-1 at 909.033 kb on - strand, within isf-1 at 909.103 kb on + strand, within isf-1 at 909.215 kb on + strand, within isf-1 at 909.215 kb on + strand, within isf-1 at 909.223 kb on - strand, within isf-1 at 909.312 kb on - strand, within isf-1 at 909.378 kb on - strand, within isf-1 at 909.530 kb on - strand at 909.569 kb on + strand at 909.623 kb on - strand at 909.701 kb on + strand at 909.723 kb on + strand at 909.731 kb on - strand at 909.731 kb on - strand at 909.800 kb on - strand at 909.859 kb on - strand at 909.939 kb on + strand at 909.942 kb on - strand at 909.947 kb on - strand at 910.143 kb on + strand, within DVU0821 at 910.151 kb on - strand, within DVU0821 at 910.187 kb on - strand, within DVU0821 at 910.619 kb on + strand, within DVU0822 at 910.878 kb on + strand, within DVU0822 at 910.971 kb on - strand, within DVU0822
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 908,945 + +0.9 908,947 - -0.1 908,966 + isf-1 DVU0819 0.12 -0.8 909,033 - isf-1 DVU0819 0.23 +0.2 909,103 + isf-1 DVU0819 0.34 -0.3 909,215 + isf-1 DVU0819 0.53 -1.0 909,215 + isf-1 DVU0819 0.53 -0.2 909,223 - isf-1 DVU0819 0.54 +0.2 909,312 - isf-1 DVU0819 0.68 -0.2 909,378 - isf-1 DVU0819 0.79 -0.5 909,530 - -1.4 909,569 + -1.1 909,623 - -2.1 909,701 + +1.5 909,723 + -0.8 909,731 - -2.3 909,731 - +1.1 909,800 - +0.1 909,859 - +0.0 909,939 + -2.3 909,942 - +0.5 909,947 - +0.1 910,143 + DVU0821 0.39 -0.3 910,151 - DVU0821 0.40 -0.7 910,187 - DVU0821 0.46 -2.4 910,619 + DVU0822 0.15 +0.2 910,878 + DVU0822 0.54 -0.1 910,971 - DVU0822 0.68 -0.7
Or see this region's nucleotide sequence