Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0755

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0753 and DVU0754 overlap by 4 nucleotidesDVU0754 and DVU0755 are separated by 111 nucleotidesDVU0755 and DVU0756 are separated by 211 nucleotidesDVU0756 and DVU0757 overlap by 1 nucleotides DVU0753: DVU0753 - amino acid ABC transporter, ATP-binding protein (TIGR), at 845,531 to 846,262 DVU0753 DVU0754: DVU0754 - hypothetical protein (TIGR), at 846,259 to 846,393 DVU0754 DVU0755: DVU0755 - sensor histidine kinase, putative (TIGR), at 846,505 to 847,872 DVU0755 DVU0756: DVU0756 - TPR domain protein (TIGR), at 848,084 to 848,797 DVU0756 DVU0757: DVU0757 - hypothetical protein (TIGR), at 848,797 to 849,117 DVU0757 Position (kb) 846 847 848Strain fitness (log2 ratio) -1 0 1at 845.542 kb on + strandat 845.609 kb on - strand, within DVU0753at 845.619 kb on + strand, within DVU0753at 845.632 kb on - strand, within DVU0753at 845.698 kb on - strand, within DVU0753at 845.768 kb on + strand, within DVU0753at 845.805 kb on - strand, within DVU0753at 845.805 kb on - strand, within DVU0753at 845.852 kb on - strand, within DVU0753at 845.902 kb on + strand, within DVU0753at 845.942 kb on - strand, within DVU0753at 845.949 kb on + strand, within DVU0753at 845.969 kb on - strand, within DVU0753at 845.980 kb on - strand, within DVU0753at 845.992 kb on + strand, within DVU0753at 845.998 kb on + strand, within DVU0753at 846.006 kb on - strand, within DVU0753at 846.030 kb on + strand, within DVU0753at 846.030 kb on + strand, within DVU0753at 846.033 kb on - strand, within DVU0753at 846.038 kb on - strand, within DVU0753at 846.060 kb on + strand, within DVU0753at 846.177 kb on - strand, within DVU0753at 846.187 kb on - strand, within DVU0753at 846.276 kb on - strand, within DVU0754at 846.488 kb on + strandat 846.511 kb on - strandat 846.627 kb on - strandat 846.632 kb on - strandat 846.780 kb on - strand, within DVU0755at 846.782 kb on - strand, within DVU0755at 846.860 kb on + strand, within DVU0755at 846.935 kb on - strand, within DVU0755at 847.211 kb on + strand, within DVU0755at 847.359 kb on + strand, within DVU0755at 847.449 kb on - strand, within DVU0755at 847.485 kb on + strand, within DVU0755at 847.493 kb on - strand, within DVU0755at 847.591 kb on - strand, within DVU0755at 847.592 kb on - strand, within DVU0755at 847.600 kb on + strand, within DVU0755at 847.613 kb on - strand, within DVU0755at 847.613 kb on - strand, within DVU0755at 847.628 kb on + strand, within DVU0755at 847.630 kb on - strand, within DVU0755at 847.693 kb on + strand, within DVU0755at 847.758 kb on + strandat 847.773 kb on - strandat 847.849 kb on + strandat 847.857 kb on - strandat 847.882 kb on + strandat 847.916 kb on + strandat 847.941 kb on + strandat 848.018 kb on - strandat 848.132 kb on + strandat 848.149 kb on + strandat 848.243 kb on + strand, within DVU0756at 848.251 kb on - strand, within DVU0756at 848.284 kb on + strand, within DVU0756at 848.304 kb on + strand, within DVU0756at 848.381 kb on - strand, within DVU0756at 848.385 kb on + strand, within DVU0756at 848.393 kb on - strand, within DVU0756at 848.393 kb on - strand, within DVU0756at 848.418 kb on - strand, within DVU0756at 848.470 kb on - strand, within DVU0756at 848.530 kb on - strand, within DVU0756at 848.554 kb on - strand, within DVU0756at 848.557 kb on - strand, within DVU0756at 848.598 kb on - strand, within DVU0756at 848.608 kb on + strand, within DVU0756at 848.692 kb on - strand, within DVU0756

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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845,542 + -0.0
845,609 - DVU0753 0.11 +0.1
845,619 + DVU0753 0.12 -1.0
845,632 - DVU0753 0.14 -0.9
845,698 - DVU0753 0.23 -0.4
845,768 + DVU0753 0.32 -0.9
845,805 - DVU0753 0.37 +0.0
845,805 - DVU0753 0.37 +0.0
845,852 - DVU0753 0.44 +0.2
845,902 + DVU0753 0.51 -0.6
845,942 - DVU0753 0.56 +0.6
845,949 + DVU0753 0.57 -0.3
845,969 - DVU0753 0.60 -0.6
845,980 - DVU0753 0.61 -0.7
845,992 + DVU0753 0.63 -0.1
845,998 + DVU0753 0.64 -0.6
846,006 - DVU0753 0.65 -0.8
846,030 + DVU0753 0.68 +0.3
846,030 + DVU0753 0.68 -1.6
846,033 - DVU0753 0.69 +1.3
846,038 - DVU0753 0.69 -1.0
846,060 + DVU0753 0.72 -0.2
846,177 - DVU0753 0.88 -0.0
846,187 - DVU0753 0.90 -1.0
846,276 - DVU0754 0.13 +0.2
846,488 + +0.3
846,511 - -0.2
846,627 - -0.4
846,632 - -0.1
846,780 - DVU0755 0.20 +0.7
846,782 - DVU0755 0.20 -0.1
846,860 + DVU0755 0.26 +1.0
846,935 - DVU0755 0.31 -0.8
847,211 + DVU0755 0.52 +1.7
847,359 + DVU0755 0.62 -1.0
847,449 - DVU0755 0.69 -1.7
847,485 + DVU0755 0.72 +0.2
847,493 - DVU0755 0.72 -1.0
847,591 - DVU0755 0.79 +0.4
847,592 - DVU0755 0.79 -0.1
847,600 + DVU0755 0.80 +0.2
847,613 - DVU0755 0.81 +0.6
847,613 - DVU0755 0.81 -0.3
847,628 + DVU0755 0.82 +1.3
847,630 - DVU0755 0.82 -0.2
847,693 + DVU0755 0.87 -1.2
847,758 + -0.4
847,773 - -0.9
847,849 + +0.4
847,857 - -0.1
847,882 + -0.7
847,916 + -0.8
847,941 + +0.1
848,018 - -0.9
848,132 + -0.4
848,149 + -0.8
848,243 + DVU0756 0.22 +0.4
848,251 - DVU0756 0.23 -0.3
848,284 + DVU0756 0.28 -1.1
848,304 + DVU0756 0.31 -0.5
848,381 - DVU0756 0.42 +0.4
848,385 + DVU0756 0.42 +0.8
848,393 - DVU0756 0.43 +0.1
848,393 - DVU0756 0.43 +0.4
848,418 - DVU0756 0.47 +1.0
848,470 - DVU0756 0.54 -0.4
848,530 - DVU0756 0.62 -0.4
848,554 - DVU0756 0.66 -0.2
848,557 - DVU0756 0.66 -0.5
848,598 - DVU0756 0.72 +1.5
848,608 + DVU0756 0.73 -1.1
848,692 - DVU0756 0.85 -0.0

Or see this region's nucleotide sequence