Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0020.1 and DVUA0021 are separated by 48 nucleotides DVUA0021 and DVUA0022 are separated by 8 nucleotides DVUA0022 and DVUA0023 are separated by 98 nucleotides
DVUA0020.1: DVUA0020.1 - SEED: FIG00604339: hypothetical protein, at 25,339 to 26,583
DVUA0020.1
DVUA0021: DVUA0021 - conserved hypothetical protein (TIGR), at 26,632 to 27,693
DVUA0021
DVUA0022: DVUA0022 - ABC transporter, ATP-binding protein (TIGR), at 27,702 to 28,388
DVUA0022
DVUA0023: DVUA0023 - ABC transporter, permease protein, putative (TIGR), at 28,487 to 29,617
DVUA0023
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.713 kb on - strand, within DVUA0020.1 at 25.726 kb on + strand, within DVUA0020.1 at 25.730 kb on - strand, within DVUA0020.1 at 25.751 kb on - strand, within DVUA0020.1 at 25.874 kb on + strand, within DVUA0020.1 at 25.882 kb on - strand, within DVUA0020.1 at 25.882 kb on - strand, within DVUA0020.1 at 25.972 kb on + strand, within DVUA0020.1 at 25.981 kb on - strand, within DVUA0020.1 at 25.981 kb on - strand, within DVUA0020.1 at 26.035 kb on - strand, within DVUA0020.1 at 26.120 kb on + strand, within DVUA0020.1 at 26.136 kb on - strand, within DVUA0020.1 at 26.138 kb on + strand, within DVUA0020.1 at 26.245 kb on - strand, within DVUA0020.1 at 26.270 kb on + strand, within DVUA0020.1 at 26.284 kb on + strand, within DVUA0020.1 at 26.366 kb on + strand, within DVUA0020.1 at 26.369 kb on - strand, within DVUA0020.1 at 26.374 kb on - strand, within DVUA0020.1 at 26.374 kb on - strand, within DVUA0020.1 at 26.384 kb on - strand, within DVUA0020.1 at 26.438 kb on + strand, within DVUA0020.1 at 26.465 kb on + strand at 26.552 kb on + strand at 26.552 kb on + strand at 26.606 kb on + strand at 26.607 kb on - strand at 26.610 kb on + strand at 26.644 kb on + strand at 26.652 kb on - strand at 26.652 kb on - strand at 26.740 kb on + strand, within DVUA0021 at 26.947 kb on + strand, within DVUA0021 at 27.005 kb on - strand, within DVUA0021 at 27.362 kb on - strand, within DVUA0021 at 27.379 kb on - strand, within DVUA0021 at 27.438 kb on - strand, within DVUA0021 at 27.447 kb on - strand, within DVUA0021 at 27.565 kb on + strand, within DVUA0021 at 27.700 kb on + strand at 27.703 kb on - strand at 27.756 kb on + strand at 27.938 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.054 kb on - strand, within DVUA0022 at 28.054 kb on - strand, within DVUA0022 at 28.054 kb on - strand, within DVUA0022 at 28.058 kb on + strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.067 kb on + strand, within DVUA0022 at 28.072 kb on + strand, within DVUA0022 at 28.080 kb on - strand, within DVUA0022 at 28.094 kb on + strand, within DVUA0022 at 28.173 kb on - strand, within DVUA0022 at 28.199 kb on + strand, within DVUA0022 at 28.259 kb on - strand, within DVUA0022 at 28.259 kb on - strand, within DVUA0022 at 28.277 kb on - strand, within DVUA0022 at 28.277 kb on - strand, within DVUA0022 at 28.322 kb on - strand at 28.364 kb on + strand at 28.372 kb on - strand at 28.416 kb on + strand at 28.492 kb on - strand at 28.495 kb on - strand at 28.502 kb on - strand at 28.520 kb on + strand at 28.576 kb on + strand at 28.675 kb on - strand, within DVUA0023 at 28.679 kb on + strand, within DVUA0023
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 25,713 - DVUA0020.1 0.30 -0.4 25,726 + DVUA0020.1 0.31 -0.4 25,730 - DVUA0020.1 0.31 -0.0 25,751 - DVUA0020.1 0.33 -0.2 25,874 + DVUA0020.1 0.43 +1.1 25,882 - DVUA0020.1 0.44 -0.5 25,882 - DVUA0020.1 0.44 +0.1 25,972 + DVUA0020.1 0.51 +0.2 25,981 - DVUA0020.1 0.52 +0.8 25,981 - DVUA0020.1 0.52 +0.3 26,035 - DVUA0020.1 0.56 -0.7 26,120 + DVUA0020.1 0.63 -0.1 26,136 - DVUA0020.1 0.64 +0.7 26,138 + DVUA0020.1 0.64 -1.1 26,245 - DVUA0020.1 0.73 -0.9 26,270 + DVUA0020.1 0.75 -0.8 26,284 + DVUA0020.1 0.76 -0.1 26,366 + DVUA0020.1 0.82 -1.9 26,369 - DVUA0020.1 0.83 -0.5 26,374 - DVUA0020.1 0.83 -0.1 26,374 - DVUA0020.1 0.83 -0.6 26,384 - DVUA0020.1 0.84 -0.1 26,438 + DVUA0020.1 0.88 +0.5 26,465 + +0.5 26,552 + -2.3 26,552 + -1.4 26,606 + -0.9 26,607 - +0.3 26,610 + +0.2 26,644 + -1.8 26,652 - +0.3 26,652 - -0.5 26,740 + DVUA0021 0.10 -1.8 26,947 + DVUA0021 0.30 -1.0 27,005 - DVUA0021 0.35 -1.2 27,362 - DVUA0021 0.69 -1.9 27,379 - DVUA0021 0.70 +0.1 27,438 - DVUA0021 0.76 +0.6 27,447 - DVUA0021 0.77 +0.8 27,565 + DVUA0021 0.88 +0.3 27,700 + -0.9 27,703 - +1.2 27,756 + -0.4 27,938 + DVUA0022 0.34 -0.5 28,046 + DVUA0022 0.50 -0.0 28,046 + DVUA0022 0.50 -0.9 28,046 + DVUA0022 0.50 +1.1 28,046 + DVUA0022 0.50 -1.4 28,046 + DVUA0022 0.50 +0.0 28,054 - DVUA0022 0.51 +0.3 28,054 - DVUA0022 0.51 -0.5 28,054 - DVUA0022 0.51 -1.2 28,058 + DVUA0022 0.52 -1.7 28,066 - DVUA0022 0.53 +0.1 28,066 - DVUA0022 0.53 -0.1 28,066 - DVUA0022 0.53 -0.1 28,066 - DVUA0022 0.53 -0.2 28,067 + DVUA0022 0.53 +0.3 28,072 + DVUA0022 0.54 +1.3 28,080 - DVUA0022 0.55 -0.2 28,094 + DVUA0022 0.57 +1.2 28,173 - DVUA0022 0.69 +0.0 28,199 + DVUA0022 0.72 -0.7 28,259 - DVUA0022 0.81 +0.0 28,259 - DVUA0022 0.81 +0.1 28,277 - DVUA0022 0.84 +0.6 28,277 - DVUA0022 0.84 -0.1 28,322 - +0.6 28,364 + -0.1 28,372 - -0.8 28,416 + +1.0 28,492 - +2.3 28,495 - +0.2 28,502 - -0.9 28,520 + -0.5 28,576 + -0.5 28,675 - DVUA0023 0.17 -0.0 28,679 + DVUA0023 0.17 -0.2
Or see this region's nucleotide sequence