Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0093

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkatA and DVUA0092 are separated by 218 nucleotidesDVUA0092 and DVUA0093 are separated by 188 nucleotidesDVUA0093 and chrB are separated by 9 nucleotides DVUA0091: katA - catalase (TIGR), at 123,495 to 124,952 katA DVUA0092: DVUA0092 - hypothetical protein (TIGR), at 125,171 to 125,650 DVUA0092 DVUA0093: DVUA0093 - chromate transport family protein (TIGR), at 125,839 to 127,176 DVUA0093 DVUA0094: chrB - chrB protein (TIGR), at 127,186 to 128,190 chrB Position (kb) 125 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 124.928 kb on - strandat 124.951 kb on + strandat 124.954 kb on - strandat 125.054 kb on + strandat 125.054 kb on + strandat 125.075 kb on - strandat 125.348 kb on + strand, within DVUA0092at 125.417 kb on - strand, within DVUA0092at 125.424 kb on + strand, within DVUA0092at 125.520 kb on - strand, within DVUA0092at 125.597 kb on - strand, within DVUA0092at 125.629 kb on - strandat 125.694 kb on + strandat 125.717 kb on + strandat 125.725 kb on - strandat 125.762 kb on + strandat 125.787 kb on - strandat 125.791 kb on + strandat 125.809 kb on - strandat 125.861 kb on + strandat 125.965 kb on - strandat 126.010 kb on - strand, within DVUA0093at 126.013 kb on + strand, within DVUA0093at 126.033 kb on + strand, within DVUA0093at 126.033 kb on + strand, within DVUA0093at 126.058 kb on - strand, within DVUA0093at 126.068 kb on - strand, within DVUA0093at 126.068 kb on - strand, within DVUA0093at 126.142 kb on + strand, within DVUA0093at 126.190 kb on - strand, within DVUA0093at 126.287 kb on + strand, within DVUA0093at 126.373 kb on + strand, within DVUA0093at 126.383 kb on + strand, within DVUA0093at 126.388 kb on + strand, within DVUA0093at 126.396 kb on - strand, within DVUA0093at 126.396 kb on - strand, within DVUA0093at 126.398 kb on + strand, within DVUA0093at 126.474 kb on - strand, within DVUA0093at 126.501 kb on + strand, within DVUA0093at 126.530 kb on + strand, within DVUA0093at 126.550 kb on - strand, within DVUA0093at 126.629 kb on + strand, within DVUA0093at 126.673 kb on + strand, within DVUA0093at 126.690 kb on + strand, within DVUA0093at 126.780 kb on + strand, within DVUA0093at 126.785 kb on + strand, within DVUA0093at 126.821 kb on + strand, within DVUA0093at 126.821 kb on + strand, within DVUA0093at 126.912 kb on + strand, within DVUA0093at 127.164 kb on + strandat 127.183 kb on + strandat 127.196 kb on - strandat 127.221 kb on + strandat 127.352 kb on - strand, within chrBat 127.376 kb on + strand, within chrBat 127.400 kb on - strand, within chrBat 127.453 kb on + strand, within chrBat 127.476 kb on + strand, within chrBat 127.580 kb on - strand, within chrBat 127.649 kb on + strand, within chrBat 127.693 kb on + strand, within chrBat 127.743 kb on - strand, within chrBat 127.757 kb on + strand, within chrBat 127.767 kb on + strand, within chrBat 127.898 kb on + strand, within chrBat 127.947 kb on - strand, within chrBat 127.963 kb on + strand, within chrBat 127.980 kb on + strand, within chrBat 128.027 kb on + strand, within chrBat 128.035 kb on - strand, within chrBat 128.172 kb on - strandat 128.174 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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124,928 - +0.7
124,951 + +1.0
124,954 - -0.9
125,054 + -1.8
125,054 + -0.1
125,075 - -0.8
125,348 + DVUA0092 0.37 +0.3
125,417 - DVUA0092 0.51 -0.0
125,424 + DVUA0092 0.53 -0.1
125,520 - DVUA0092 0.73 +0.2
125,597 - DVUA0092 0.89 +0.4
125,629 - -0.0
125,694 + -1.1
125,717 + +1.3
125,725 - -0.6
125,762 + -2.2
125,787 - +0.2
125,791 + +0.4
125,809 - +0.1
125,861 + +0.1
125,965 - +1.8
126,010 - DVUA0093 0.13 -0.2
126,013 + DVUA0093 0.13 +0.2
126,033 + DVUA0093 0.14 -0.2
126,033 + DVUA0093 0.14 +0.5
126,058 - DVUA0093 0.16 -1.4
126,068 - DVUA0093 0.17 +0.1
126,068 - DVUA0093 0.17 -0.4
126,142 + DVUA0093 0.23 -0.8
126,190 - DVUA0093 0.26 -0.8
126,287 + DVUA0093 0.33 -0.9
126,373 + DVUA0093 0.40 +0.7
126,383 + DVUA0093 0.41 -1.2
126,388 + DVUA0093 0.41 +0.4
126,396 - DVUA0093 0.42 -0.1
126,396 - DVUA0093 0.42 -0.6
126,398 + DVUA0093 0.42 +0.1
126,474 - DVUA0093 0.47 -1.6
126,501 + DVUA0093 0.49 +1.3
126,530 + DVUA0093 0.52 -0.8
126,550 - DVUA0093 0.53 -1.1
126,629 + DVUA0093 0.59 -0.6
126,673 + DVUA0093 0.62 -1.1
126,690 + DVUA0093 0.64 -0.8
126,780 + DVUA0093 0.70 +0.6
126,785 + DVUA0093 0.71 +0.0
126,821 + DVUA0093 0.73 -0.2
126,821 + DVUA0093 0.73 +0.1
126,912 + DVUA0093 0.80 +0.8
127,164 + +0.3
127,183 + -0.3
127,196 - -1.0
127,221 + -0.7
127,352 - chrB DVUA0094 0.17 -0.6
127,376 + chrB DVUA0094 0.19 -0.9
127,400 - chrB DVUA0094 0.21 -0.2
127,453 + chrB DVUA0094 0.27 +0.6
127,476 + chrB DVUA0094 0.29 +0.6
127,580 - chrB DVUA0094 0.39 -2.8
127,649 + chrB DVUA0094 0.46 +1.1
127,693 + chrB DVUA0094 0.50 -0.3
127,743 - chrB DVUA0094 0.55 +1.0
127,757 + chrB DVUA0094 0.57 -0.2
127,767 + chrB DVUA0094 0.58 +0.2
127,898 + chrB DVUA0094 0.71 +0.0
127,947 - chrB DVUA0094 0.76 -0.2
127,963 + chrB DVUA0094 0.77 -0.7
127,980 + chrB DVUA0094 0.79 +0.2
128,027 + chrB DVUA0094 0.84 +0.3
128,035 - chrB DVUA0094 0.84 -0.1
128,172 - +0.0
128,174 + -0.0

Or see this region's nucleotide sequence