Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3131

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3128 and DVU3129 are separated by 13 nucleotidesDVU3129 and DVU3130 are separated by 75 nucleotidesDVU3130 and DVU3131 are separated by 178 nucleotidesDVU3131 and DVU3132 overlap by 4 nucleotides DVU3128: DVU3128 - lipoprotein, putative (TIGR), at 3,276,158 to 3,276,775 DVU3128 DVU3129: DVU3129 - hypothetical protein (TIGR), at 3,276,789 to 3,276,956 DVU3129 DVU3130: DVU3130 - hypothetical protein (TIGR), at 3,277,032 to 3,277,244 DVU3130 DVU3131: DVU3131 - transcriptional regulator, putative (TIGR), at 3,277,423 to 3,278,370 DVU3131 DVU3132: DVU3132 - glycerol-3-phosphate dehydrogenase, FAD-dependent (TIGR), at 3,278,367 to 3,280,007 DVU3132 Position (kb) 3277 3278 3279Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3276.427 kb on + strand, within DVU3128at 3276.469 kb on - strand, within DVU3128at 3276.474 kb on - strand, within DVU3128at 3276.485 kb on + strand, within DVU3128at 3276.490 kb on + strand, within DVU3128at 3276.493 kb on - strand, within DVU3128at 3276.498 kb on - strand, within DVU3128at 3276.555 kb on - strand, within DVU3128at 3276.587 kb on - strand, within DVU3128at 3276.605 kb on + strand, within DVU3128at 3276.608 kb on - strand, within DVU3128at 3276.613 kb on - strand, within DVU3128at 3276.666 kb on + strand, within DVU3128at 3276.671 kb on + strand, within DVU3128at 3276.680 kb on - strand, within DVU3128at 3276.698 kb on + strand, within DVU3128at 3276.698 kb on + strand, within DVU3128at 3276.706 kb on - strand, within DVU3128at 3276.777 kb on - strandat 3276.892 kb on + strand, within DVU3129at 3276.903 kb on + strand, within DVU3129at 3276.958 kb on - strandat 3276.978 kb on + strandat 3276.978 kb on + strandat 3277.011 kb on - strandat 3277.634 kb on - strand, within DVU3131at 3277.754 kb on - strand, within DVU3131at 3277.767 kb on + strand, within DVU3131at 3277.820 kb on + strand, within DVU3131at 3277.828 kb on - strand, within DVU3131at 3277.896 kb on + strand, within DVU3131at 3277.905 kb on - strand, within DVU3131at 3277.946 kb on + strand, within DVU3131at 3277.954 kb on - strand, within DVU3131at 3277.983 kb on + strand, within DVU3131at 3277.983 kb on + strand, within DVU3131at 3277.991 kb on - strand, within DVU3131at 3278.025 kb on - strand, within DVU3131at 3278.148 kb on - strand, within DVU3131at 3278.214 kb on + strand, within DVU3131at 3278.214 kb on + strand, within DVU3131at 3278.221 kb on + strand, within DVU3131at 3278.292 kb on - strandat 3278.349 kb on + strandat 3278.364 kb on + strandat 3278.372 kb on - strandat 3278.420 kb on + strandat 3278.479 kb on + strandat 3278.493 kb on + strandat 3278.566 kb on + strand, within DVU3132at 3278.566 kb on + strand, within DVU3132at 3278.574 kb on - strand, within DVU3132at 3278.582 kb on + strand, within DVU3132at 3278.615 kb on + strand, within DVU3132at 3278.636 kb on + strand, within DVU3132at 3278.636 kb on + strand, within DVU3132at 3278.636 kb on + strand, within DVU3132at 3278.636 kb on + strand, within DVU3132at 3278.651 kb on - strand, within DVU3132at 3278.674 kb on - strand, within DVU3132at 3278.747 kb on - strand, within DVU3132at 3278.762 kb on + strand, within DVU3132at 3278.775 kb on - strand, within DVU3132at 3278.845 kb on - strand, within DVU3132at 3278.850 kb on + strand, within DVU3132at 3278.896 kb on + strand, within DVU3132at 3278.949 kb on - strand, within DVU3132at 3278.978 kb on + strand, within DVU3132at 3278.991 kb on + strand, within DVU3132at 3278.999 kb on - strand, within DVU3132at 3278.999 kb on - strand, within DVU3132at 3279.000 kb on + strand, within DVU3132at 3279.052 kb on + strand, within DVU3132at 3279.117 kb on - strand, within DVU3132at 3279.156 kb on + strand, within DVU3132at 3279.209 kb on + strand, within DVU3132at 3279.229 kb on + strand, within DVU3132at 3279.266 kb on - strand, within DVU3132

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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3,276,427 + DVU3128 0.44 -2.2
3,276,469 - DVU3128 0.50 -0.7
3,276,474 - DVU3128 0.51 -0.6
3,276,485 + DVU3128 0.53 -0.6
3,276,490 + DVU3128 0.54 -0.6
3,276,493 - DVU3128 0.54 +0.1
3,276,498 - DVU3128 0.55 +0.1
3,276,555 - DVU3128 0.64 +0.2
3,276,587 - DVU3128 0.69 +1.1
3,276,605 + DVU3128 0.72 -1.1
3,276,608 - DVU3128 0.73 +0.1
3,276,613 - DVU3128 0.74 -2.1
3,276,666 + DVU3128 0.82 +0.2
3,276,671 + DVU3128 0.83 -0.2
3,276,680 - DVU3128 0.84 -0.9
3,276,698 + DVU3128 0.87 -0.1
3,276,698 + DVU3128 0.87 -0.8
3,276,706 - DVU3128 0.89 -0.1
3,276,777 - +0.8
3,276,892 + DVU3129 0.61 +0.4
3,276,903 + DVU3129 0.68 +0.2
3,276,958 - -0.2
3,276,978 + +1.9
3,276,978 + -0.3
3,277,011 - -2.6
3,277,634 - DVU3131 0.22 +0.3
3,277,754 - DVU3131 0.35 +0.2
3,277,767 + DVU3131 0.36 -0.3
3,277,820 + DVU3131 0.42 -1.4
3,277,828 - DVU3131 0.43 -0.5
3,277,896 + DVU3131 0.50 +0.5
3,277,905 - DVU3131 0.51 -2.7
3,277,946 + DVU3131 0.55 -1.1
3,277,954 - DVU3131 0.56 -1.4
3,277,983 + DVU3131 0.59 +0.2
3,277,983 + DVU3131 0.59 -0.9
3,277,991 - DVU3131 0.60 -0.8
3,278,025 - DVU3131 0.64 +0.3
3,278,148 - DVU3131 0.76 -0.7
3,278,214 + DVU3131 0.83 -0.2
3,278,214 + DVU3131 0.83 -2.5
3,278,221 + DVU3131 0.84 -0.7
3,278,292 - +1.0
3,278,349 + -0.1
3,278,364 + -1.5
3,278,372 - +0.9
3,278,420 + -0.0
3,278,479 + +0.5
3,278,493 + +1.5
3,278,566 + DVU3132 0.12 -0.6
3,278,566 + DVU3132 0.12 -0.2
3,278,574 - DVU3132 0.13 +0.4
3,278,582 + DVU3132 0.13 +0.2
3,278,615 + DVU3132 0.15 +0.7
3,278,636 + DVU3132 0.16 +0.4
3,278,636 + DVU3132 0.16 +0.5
3,278,636 + DVU3132 0.16 +3.1
3,278,636 + DVU3132 0.16 -0.1
3,278,651 - DVU3132 0.17 +3.1
3,278,674 - DVU3132 0.19 +1.3
3,278,747 - DVU3132 0.23 +1.1
3,278,762 + DVU3132 0.24 -1.5
3,278,775 - DVU3132 0.25 -1.5
3,278,845 - DVU3132 0.29 -0.5
3,278,850 + DVU3132 0.29 +0.3
3,278,896 + DVU3132 0.32 -0.2
3,278,949 - DVU3132 0.35 -0.5
3,278,978 + DVU3132 0.37 +0.1
3,278,991 + DVU3132 0.38 -2.5
3,278,999 - DVU3132 0.39 -1.3
3,278,999 - DVU3132 0.39 +0.1
3,279,000 + DVU3132 0.39 +0.2
3,279,052 + DVU3132 0.42 -0.9
3,279,117 - DVU3132 0.46 -1.0
3,279,156 + DVU3132 0.48 -0.6
3,279,209 + DVU3132 0.51 -2.1
3,279,229 + DVU3132 0.53 -0.4
3,279,266 - DVU3132 0.55 +0.0

Or see this region's nucleotide sequence