Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcm and vsr are separated by 8 nucleotides vsr and DVU2844 are separated by 16 nucleotides DVU2844 and hit are separated by 7 nucleotides
DVU2842: dcm - type II DNA modification methyltransferase, putative (TIGR), at 2,946,324 to 2,947,400
dcm
DVU2843: vsr - DNA mismatch endonuclease Vsr, putative (TIGR), at 2,947,409 to 2,947,819
vsr
DVU2844: DVU2844 - hypothetical protein (TIGR), at 2,947,836 to 2,948,699
DVU2844
DVU2845: hit - HIT family protein (TIGR), at 2,948,707 to 2,949,135
hit
Position (kb)
2947
2948 Strain fitness (log2 ratio)
-2
-1
0
1 at 2947.418 kb on + strand at 2947.463 kb on - strand, within vsr at 2947.478 kb on - strand, within vsr at 2947.541 kb on + strand, within vsr at 2947.552 kb on - strand, within vsr at 2947.726 kb on - strand, within vsr at 2947.775 kb on + strand, within vsr at 2948.003 kb on - strand, within DVU2844 at 2948.076 kb on - strand, within DVU2844 at 2948.119 kb on + strand, within DVU2844 at 2948.171 kb on - strand, within DVU2844 at 2948.228 kb on - strand, within DVU2844 at 2948.235 kb on - strand, within DVU2844 at 2948.241 kb on - strand, within DVU2844 at 2948.388 kb on - strand, within DVU2844 at 2948.390 kb on + strand, within DVU2844 at 2948.398 kb on - strand, within DVU2844 at 2948.430 kb on + strand, within DVU2844 at 2948.438 kb on - strand, within DVU2844 at 2948.440 kb on + strand, within DVU2844 at 2948.530 kb on - strand, within DVU2844 at 2948.548 kb on + strand, within DVU2844 at 2948.589 kb on + strand, within DVU2844 at 2948.600 kb on + strand, within DVU2844 at 2948.666 kb on + strand at 2948.739 kb on + strand at 2948.749 kb on + strand at 2948.749 kb on + strand at 2948.751 kb on + strand, within hit
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 2,947,418 + -0.6 2,947,463 - vsr DVU2843 0.13 +0.7 2,947,478 - vsr DVU2843 0.17 +1.1 2,947,541 + vsr DVU2843 0.32 +0.5 2,947,552 - vsr DVU2843 0.35 +0.5 2,947,726 - vsr DVU2843 0.77 +0.0 2,947,775 + vsr DVU2843 0.89 -0.1 2,948,003 - DVU2844 0.19 -0.2 2,948,076 - DVU2844 0.28 +0.4 2,948,119 + DVU2844 0.33 -0.1 2,948,171 - DVU2844 0.39 -0.1 2,948,228 - DVU2844 0.45 -0.8 2,948,235 - DVU2844 0.46 -0.5 2,948,241 - DVU2844 0.47 +0.2 2,948,388 - DVU2844 0.64 -0.4 2,948,390 + DVU2844 0.64 -0.3 2,948,398 - DVU2844 0.65 -2.2 2,948,430 + DVU2844 0.69 +0.2 2,948,438 - DVU2844 0.70 -0.5 2,948,440 + DVU2844 0.70 -2.0 2,948,530 - DVU2844 0.80 +0.1 2,948,548 + DVU2844 0.82 -1.2 2,948,589 + DVU2844 0.87 -0.6 2,948,600 + DVU2844 0.88 -0.7 2,948,666 + -0.7 2,948,739 + +0.3 2,948,749 + -0.5 2,948,749 + -0.8 2,948,751 + hit DVU2845 0.10 -0.2
Or see this region's nucleotide sequence