Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1774 and ribB are separated by 262 nucleotides ribB and DVU1776 are separated by 251 nucleotides DVU1776 and cynT are separated by 108 nucleotides
DVU1774: DVU1774 - hypothetical protein (TIGR), at 1,838,748 to 1,839,629
DVU1774
DVU1775: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase (TIGR), at 1,839,892 to 1,840,536
ribB
DVU1776: DVU1776 - hypothetical protein (TIGR), at 1,840,788 to 1,840,901
DVU1776
DVU1777: cynT - carbonic anhydrase (TIGR), at 1,841,010 to 1,841,747
cynT
Position (kb)
1839
1840
1841 Strain fitness (log2 ratio)
-1
0
1 at 1838.954 kb on - strand, within DVU1774 at 1839.157 kb on + strand, within DVU1774 at 1839.175 kb on - strand, within DVU1774 at 1839.225 kb on + strand, within DVU1774 at 1839.260 kb on + strand, within DVU1774 at 1839.268 kb on - strand, within DVU1774 at 1839.285 kb on + strand, within DVU1774 at 1839.343 kb on + strand, within DVU1774 at 1839.501 kb on + strand, within DVU1774 at 1839.507 kb on + strand, within DVU1774 at 1839.521 kb on + strand, within DVU1774 at 1839.529 kb on - strand, within DVU1774 at 1839.529 kb on - strand, within DVU1774 at 1839.564 kb on - strand at 1839.635 kb on - strand at 1839.723 kb on - strand at 1839.827 kb on - strand at 1839.837 kb on - strand at 1839.887 kb on + strand at 1839.950 kb on - strand at 1839.975 kb on - strand, within ribB at 1840.034 kb on + strand, within ribB at 1840.034 kb on + strand, within ribB at 1840.035 kb on + strand, within ribB at 1840.042 kb on - strand, within ribB at 1840.453 kb on + strand, within ribB at 1840.453 kb on + strand, within ribB at 1840.461 kb on - strand, within ribB at 1840.461 kb on - strand, within ribB at 1840.513 kb on - strand at 1840.513 kb on - strand at 1840.640 kb on + strand at 1840.672 kb on - strand at 1840.676 kb on + strand at 1840.684 kb on - strand at 1841.165 kb on - strand, within cynT
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 1,838,954 - DVU1774 0.23 -0.3 1,839,157 + DVU1774 0.46 +0.4 1,839,175 - DVU1774 0.48 +0.9 1,839,225 + DVU1774 0.54 -0.5 1,839,260 + DVU1774 0.58 +0.1 1,839,268 - DVU1774 0.59 -1.3 1,839,285 + DVU1774 0.61 -0.7 1,839,343 + DVU1774 0.67 +0.2 1,839,501 + DVU1774 0.85 +0.5 1,839,507 + DVU1774 0.86 +0.0 1,839,521 + DVU1774 0.88 +0.0 1,839,529 - DVU1774 0.89 +0.0 1,839,529 - DVU1774 0.89 -0.0 1,839,564 - -0.1 1,839,635 - +0.1 1,839,723 - +0.3 1,839,827 - -0.4 1,839,837 - -0.1 1,839,887 + -0.6 1,839,950 - +0.1 1,839,975 - ribB DVU1775 0.13 -0.1 1,840,034 + ribB DVU1775 0.22 +1.5 1,840,034 + ribB DVU1775 0.22 +0.6 1,840,035 + ribB DVU1775 0.22 -0.1 1,840,042 - ribB DVU1775 0.23 +1.4 1,840,453 + ribB DVU1775 0.87 +0.3 1,840,453 + ribB DVU1775 0.87 +1.6 1,840,461 - ribB DVU1775 0.88 -0.2 1,840,461 - ribB DVU1775 0.88 -0.0 1,840,513 - +0.7 1,840,513 - -0.8 1,840,640 + +0.2 1,840,672 - -0.0 1,840,676 + -0.8 1,840,684 - -0.2 1,841,165 - cynT DVU1777 0.21 +1.3
Or see this region's nucleotide sequence