Experiment: MoYLS4 with DMSO 10%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1246 and DVU1247 are separated by 31 nucleotides DVU1247 and argS are separated by 20 nucleotides argS and fabD are separated by 230 nucleotides
DVU1246: DVU1246 - membrane protein, putative (TIGR), at 1,332,313 to 1,333,116
DVU1246
DVU1247: DVU1247 - hypothetical protein (TIGR), at 1,333,148 to 1,333,969
DVU1247
DVU1248: argS - arginyl-tRNA synthetase (TIGR), at 1,333,990 to 1,335,645
argS
DVU1249: fabD - malonyl CoA-acyl carrier protein transacylase (TIGR), at 1,335,876 to 1,336,829
fabD
Position (kb)
1333
1334
1335
1336 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1333.080 kb on - strand at 1333.177 kb on - strand at 1333.184 kb on - strand at 1333.184 kb on - strand at 1333.241 kb on + strand, within DVU1247 at 1333.243 kb on + strand, within DVU1247 at 1333.282 kb on + strand, within DVU1247 at 1333.476 kb on + strand, within DVU1247 at 1333.494 kb on + strand, within DVU1247 at 1333.781 kb on - strand, within DVU1247 at 1333.803 kb on + strand, within DVU1247 at 1333.859 kb on - strand, within DVU1247 at 1333.924 kb on - strand at 1335.787 kb on - strand at 1335.829 kb on + strand at 1335.835 kb on + strand at 1335.837 kb on - strand at 1335.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10% remove 1,333,080 - -0.3 1,333,177 - -2.8 1,333,184 - -0.4 1,333,184 - +0.4 1,333,241 + DVU1247 0.11 +0.4 1,333,243 + DVU1247 0.12 +0.9 1,333,282 + DVU1247 0.16 -0.4 1,333,476 + DVU1247 0.40 +0.6 1,333,494 + DVU1247 0.42 -0.2 1,333,781 - DVU1247 0.77 -1.0 1,333,803 + DVU1247 0.80 +0.9 1,333,859 - DVU1247 0.86 +1.3 1,333,924 - +0.6 1,335,787 - -0.6 1,335,829 + -1.2 1,335,835 + +0.3 1,335,837 - -0.1 1,335,844 - -0.3
Or see this region's nucleotide sequence