Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1247

Experiment: MoYLS4 with DMSO 10%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1245 and DVU1246 are separated by 11 nucleotidesDVU1246 and DVU1247 are separated by 31 nucleotidesDVU1247 and argS are separated by 20 nucleotides DVU1245: DVU1245 - ABC transporter, ATP-binding protein (TIGR), at 1,331,477 to 1,332,301 DVU1245 DVU1246: DVU1246 - membrane protein, putative (TIGR), at 1,332,313 to 1,333,116 DVU1246 DVU1247: DVU1247 - hypothetical protein (TIGR), at 1,333,148 to 1,333,969 DVU1247 DVU1248: argS - arginyl-tRNA synthetase (TIGR), at 1,333,990 to 1,335,645 argS Position (kb) 1333 1334Strain fitness (log2 ratio) -3 -2 -1 0 1at 1332.151 kb on - strand, within DVU1245at 1332.278 kb on - strandat 1332.401 kb on + strand, within DVU1246at 1332.432 kb on + strand, within DVU1246at 1332.578 kb on + strand, within DVU1246at 1332.586 kb on + strand, within DVU1246at 1332.694 kb on + strand, within DVU1246at 1332.760 kb on - strand, within DVU1246at 1332.849 kb on + strand, within DVU1246at 1333.080 kb on - strandat 1333.177 kb on - strandat 1333.184 kb on - strandat 1333.184 kb on - strandat 1333.241 kb on + strand, within DVU1247at 1333.243 kb on + strand, within DVU1247at 1333.282 kb on + strand, within DVU1247at 1333.476 kb on + strand, within DVU1247at 1333.494 kb on + strand, within DVU1247at 1333.781 kb on - strand, within DVU1247at 1333.803 kb on + strand, within DVU1247at 1333.859 kb on - strand, within DVU1247at 1333.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with DMSO 10%
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1,332,151 - DVU1245 0.82 -2.7
1,332,278 - -0.0
1,332,401 + DVU1246 0.11 +0.1
1,332,432 + DVU1246 0.15 -2.3
1,332,578 + DVU1246 0.33 +0.9
1,332,586 + DVU1246 0.34 +0.3
1,332,694 + DVU1246 0.47 -0.4
1,332,760 - DVU1246 0.56 -0.9
1,332,849 + DVU1246 0.67 -1.0
1,333,080 - -0.3
1,333,177 - -2.8
1,333,184 - -0.4
1,333,184 - +0.4
1,333,241 + DVU1247 0.11 +0.4
1,333,243 + DVU1247 0.12 +0.9
1,333,282 + DVU1247 0.16 -0.4
1,333,476 + DVU1247 0.40 +0.6
1,333,494 + DVU1247 0.42 -0.2
1,333,781 - DVU1247 0.77 -1.0
1,333,803 + DVU1247 0.80 +0.9
1,333,859 - DVU1247 0.86 +1.3
1,333,924 - +0.6

Or see this region's nucleotide sequence