Experiment: MoYLS4 with Cefoxitin 5ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisD and DVU0797 are separated by 129 nucleotides DVU0797 and DVU0798 are separated by 59 nucleotides DVU0798 and DVU0799 are separated by 247 nucleotides
DVU0796: hisD - histidinol dehydrogenase (TIGR), at 881,106 to 882,416
hisD
DVU0797: DVU0797 - conserved hypothetical protein (TIGR), at 882,546 to 883,976
DVU0797
DVU0798: DVU0798 - hypothetical protein (TIGR), at 884,036 to 884,131
DVU0798
DVU0799: DVU0799 - conserved hypothetical protein (TIGR), at 884,379 to 885,779
DVU0799
Position (kb) 882
883
884 Strain fitness (log2 ratio) -2
-1
0
1
2 at 881.602 kb on - strand, within hisD at 881.732 kb on - strand, within hisD at 881.732 kb on - strand, within hisD at 881.955 kb on - strand, within hisD at 882.023 kb on + strand, within hisD at 882.055 kb on - strand, within hisD at 882.347 kb on - strand at 882.454 kb on + strand at 882.511 kb on - strand at 882.635 kb on + strand at 882.648 kb on - strand at 882.661 kb on + strand at 882.661 kb on + strand at 882.725 kb on - strand, within DVU0797 at 882.746 kb on + strand, within DVU0797 at 882.754 kb on - strand, within DVU0797 at 882.754 kb on - strand, within DVU0797 at 882.759 kb on - strand, within DVU0797 at 882.850 kb on - strand, within DVU0797 at 882.869 kb on + strand, within DVU0797 at 882.877 kb on - strand, within DVU0797 at 882.884 kb on - strand, within DVU0797 at 882.952 kb on - strand, within DVU0797 at 882.961 kb on + strand, within DVU0797 at 882.969 kb on - strand, within DVU0797 at 883.000 kb on - strand, within DVU0797 at 883.038 kb on + strand, within DVU0797 at 883.205 kb on + strand, within DVU0797 at 883.311 kb on - strand, within DVU0797 at 883.319 kb on + strand, within DVU0797 at 883.381 kb on - strand, within DVU0797 at 883.533 kb on + strand, within DVU0797 at 883.540 kb on - strand, within DVU0797 at 883.541 kb on - strand, within DVU0797 at 883.607 kb on - strand, within DVU0797 at 883.645 kb on - strand, within DVU0797 at 883.701 kb on + strand, within DVU0797 at 883.716 kb on + strand, within DVU0797 at 883.828 kb on + strand, within DVU0797 at 884.061 kb on - strand, within DVU0798 at 884.120 kb on + strand, within DVU0798 at 884.206 kb on - strand at 884.228 kb on - strand at 884.271 kb on + strand at 884.297 kb on - strand at 884.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Cefoxitin 5ug/mL remove 881,602 - hisD DVU0796 0.38 -0.2 881,732 - hisD DVU0796 0.48 -0.1 881,732 - hisD DVU0796 0.48 -2.7 881,955 - hisD DVU0796 0.65 +1.8 882,023 + hisD DVU0796 0.70 -2.1 882,055 - hisD DVU0796 0.72 +0.8 882,347 - -1.2 882,454 + -0.3 882,511 - -0.1 882,635 + -0.2 882,648 - +0.3 882,661 + +0.6 882,661 + +0.2 882,725 - DVU0797 0.13 -0.3 882,746 + DVU0797 0.14 +0.2 882,754 - DVU0797 0.15 -0.1 882,754 - DVU0797 0.15 +0.2 882,759 - DVU0797 0.15 -0.9 882,850 - DVU0797 0.21 -1.9 882,869 + DVU0797 0.23 -0.2 882,877 - DVU0797 0.23 -0.3 882,884 - DVU0797 0.24 +0.3 882,952 - DVU0797 0.28 -0.3 882,961 + DVU0797 0.29 -0.9 882,969 - DVU0797 0.30 -0.2 883,000 - DVU0797 0.32 -1.0 883,038 + DVU0797 0.34 -0.4 883,205 + DVU0797 0.46 -0.2 883,311 - DVU0797 0.53 +0.0 883,319 + DVU0797 0.54 -0.2 883,381 - DVU0797 0.58 -0.2 883,533 + DVU0797 0.69 +0.1 883,540 - DVU0797 0.69 +0.1 883,541 - DVU0797 0.70 -0.6 883,607 - DVU0797 0.74 -0.0 883,645 - DVU0797 0.77 -0.2 883,701 + DVU0797 0.81 -0.0 883,716 + DVU0797 0.82 -0.2 883,828 + DVU0797 0.90 +1.6 884,061 - DVU0798 0.26 -0.8 884,120 + DVU0798 0.88 +0.5 884,206 - +0.0 884,228 - +0.0 884,271 + +0.9 884,297 - +0.1 884,335 - -0.3
Or see this region's nucleotide sequence